halophFGD

Basic Information

Locus ID: CH03.429

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: Belongs to the peptidase C19 family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
CH03	5653476	5661272	+	CH03.429

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.26	97,791.50 Da	44.53	79.86	-0.38

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd02674	Peptidase_C19R	685	880	5.91026E-63	-
Pfam	PF00443	Ubiquitin carboxyl-terminal hydrolase	258	879	5.4E-83	IPR001394
SUPERFAMILY	SSF54001	Cysteine proteinases	256	881	1.63E-109	IPR038765
Gene3D	G3DSA:3.90.70.10	Cysteine proteinases	688	882	1.1E-56	-
Gene3D	G3DSA:3.90.70.10	Cysteine proteinases	248	475	1.9E-66	-
ProSiteProfiles	PS50235	Ubiquitin specific protease (USP) domain profile.	258	882	55.438656	IPR028889
ProSitePatterns	PS00972	Ubiquitin specific protease (USP) domain signature 1.	259	274	-	IPR018200
ProSitePatterns	PS00973	Ubiquitin specific protease (USP) domain signature 2.	824	841	-	IPR018200

Gene Ontology

Biological Process:

GO:0006511 (ubiquitin-dependent protein catabolic process) GO:0016579 (protein deubiquitination)

Molecular Function:

GO:0004843 (cysteine-type deubiquitinase activity)

KEGG Pathway

KO Term:

K21343 (ubiquitin carboxyl-terminal hydrolase 15 [EC:3.4.19.12])

Pathway:

ko04137 (Mitophagy - animal) map04137 (Mitophagy - animal)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT5G22030.1	ubiquitin-specific protease 8.	1.12E-261
RefSeq	XP_039793420.1	ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 [Panicum virgatum]	0
Swiss-Prot	Q9C585	Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2	1.08E-260
TrEMBL	A0A8T0VG34	Ubiquitin carboxyl-terminal hydrolase OS=Panicum virgatum OX=38727 GN=PVAP13_2NG043700 PE=3 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg15180, jg16749, jg22501, jg36058, jg37396, jg8098
Aizoaceae	Mesembryanthemum crystallinum	4	gene_14623, gene_15266, gene_6869, gene_692
Amaranthaceae	Atriplex hortensis	3	Ah004001, Ah016422, Ah027748
Amaranthaceae	Beta vulgaris	4	BVRB_1g013070, BVRB_5g104230, BVRB_5g108750, BVRB_7g171320
Amaranthaceae	Salicornia bigelovii	8	Sbi_jg1453, Sbi_jg15770, Sbi_jg15771, Sbi_jg24154 ... Sbi_jg35107, Sbi_jg40688, Sbi_jg50692, Sbi_jg7995
Amaranthaceae	Salicornia europaea	4	Seu_jg12044, Seu_jg13783, Seu_jg2252, Seu_jg3283
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00003451, GOSA_00010746, GOSA_00026351
Amaranthaceae	Suaeda glauca	8	Sgl44166, Sgl48935, Sgl51333, Sgl52363, Sgl56578, Sgl57655 ... Sgl72711, Sgl76250
Amaranthaceae	Chenopodium album	13	gene:ENSEOMG00000005045, gene:ENSEOMG00000005973 ... gene:ENSEOMG00000007359, gene:ENSEOMG00000011887, gene:ENSEOMG00000022340, gene:ENSEOMG00000023048, gene:ENSEOMG00000023227, gene:ENSEOMG00000023536, gene:ENSEOMG00000024167, gene:ENSEOMG00000034902, gene:ENSEOMG00000036939, gene:ENSEOMG00000039874, gene:ENSEOMG00000047171
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.5AG0011380, CQ.Regalona.r1.5BG0005110 ... CQ.Regalona.r1.5BG0011820, CQ.Regalona.r1.7AG0005280, CQ.Regalona.r1.8AG0012430, CQ.Regalona.r1.9BG0000540
Anacardiaceae	Pistacia vera	4	pistato.v30055480, pistato.v30074910, pistato.v30133200 ... pistato.v30276840
Apiaceae	Apium graveolens	7	Ag11G04399, Ag1G00062, Ag2G01212, Ag2G01608, Ag3G00677 ... Ag6G02210, AgUnG00997
Arecaceae	Cocos nucifera	4	COCNU_03G000200, COCNU_10G009170, COCNU_15G004400 ... scaffold007358G000010
Arecaceae	Phoenix dactylifera	6	gene-LOC103707607, gene-LOC103710820, gene-LOC103714421 ... gene-LOC103714957, gene-LOC103722919, gene-LOC120103833
Asparagaceae	Asparagus officinalis	3	AsparagusV1_02.433.V1.1, AsparagusV1_05.1652.V1.1 ... AsparagusV1_10.135.V1.1
Asteraceae	Flaveria trinervia	6	Ftri10G20462, Ftri13G16792, Ftri15G02660, Ftri16G01695 ... Ftri2G16266, Ftri6G05228
Brassicaceae	Arabidopsis thaliana	5	AT1G32850.1, AT2G40930.1, AT4G10570.1, AT4G10590.2 ... AT5G22030.2
Brassicaceae	Eutrema salsugineum	5	Thhalv10006750m.g.v1.0, Thhalv10012650m.g.v1.0 ... Thhalv10016401m.g.v1.0, Thhalv10027354m.g.v1.0, Thhalv10028406m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g28150.v2.2, Sp4g23240.v2.2, Sp6g06860.v2.2 ... Sp6g23160.v2.2
Brassicaceae	Brassica nigra	9	BniB01g004480.2N, BniB01g008660.2N, BniB02g041530.2N ... BniB03g035870.2N, BniB04g049530.2N, BniB05g058320.2N, BniB08g010970.2N, BniB08g035970.2N, BniB08g052090.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq03G0661, Ceq04G0858, Ceq04G1239, Ceq05G1541
Casuarinaceae	Casuarina glauca	8	Cgl03G0751, Cgl04G0962, Cgl04G0963, Cgl04G0964, Cgl04G0965 ... Cgl04G0974, Cgl04G1402, Cgl05G1543
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno01g00060, gene.Cymno08g02970, gene.Cymno10g04770
Dunaliellaceae	Dunaliella salina	1	Dusal.0299s00004.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g29410, gene.Thate04g05110, gene.Thate04g21560
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG01.1884, evm.TU.LG01.2662, evm.TU.LG09.547 ... evm.TU.LG10.1627
Plantaginaceae	Plantago ovata	4	Pov_00003074, Pov_00003619, Pov_00025505, Pov_00026576
Plumbaginaceae	Limonium bicolor	10	Lb1G02466, Lb2G10344, Lb2G13622, Lb2G15163, Lb3G20268 ... Lb4G23140, Lb5G28584, Lb5G28851, Lb5G28853, Lb6G29807
Poaceae	Echinochloa crus-galli	12	AH01.2506, AH03.279, AH04.1234, AH05.4108, BH01.2837 ... BH03.357, BH04.1208, BH05.4206, CH01.3043, CH03.429, CH04.1384, CH05.4432
Poaceae	Eleusine coracana subsp. coracana	10	gene-QOZ80_2AG0120360, gene-QOZ80_2BG0174840 ... gene-QOZ80_2BG0174850, gene-QOZ80_5AG0398500, gene-QOZ80_5BG0447120, gene-QOZ80_7AG0556150, gene-QOZ80_7BG0587090, gene-QOZ80_9AG0680900, gene-QOZ80_9BG0707130, gene-QOZ80_UnG0728540
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.1HG0035690.2, HORVU.MOREX.r3.2HG0152430.1 ... HORVU.MOREX.r3.4HG0365930.1, HORVU.MOREX.r3.5HG0425920.1
Poaceae	Lolium multiflorum	6	gene-QYE76_001172, gene-QYE76_008273, gene-QYE76_010796 ... gene-QYE76_010860, gene-QYE76_042572, gene-QYE76_067043
Poaceae	Oryza coarctata	8	Oco13G001710, Oco14G001850, Oco19G001010, Oco20G001150 ... Oco21G005460, Oco22G006480, Oco23G010770, Oco24G010570
Poaceae	Oryza sativa	7	LOC_Os01g48600.1, LOC_Os07g06610.1, LOC_Os09g17480.1 ... LOC_Os10g07270.1, LOC_Os11g28360.1, LOC_Os11g28365.1, LOC_Os12g42600.1
Poaceae	Paspalum vaginatum	4	gene-BS78_02G039200, gene-BS78_05G127000, gene-BS78_K096800 ... gene-BS78_08G153700
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0303555, Pt_Chr0303561, Pt_Chr0501276, Pt_Chr0704572 ... Pt_Chr0704933
Poaceae	Sporobolus alterniflorus	10	Chr06G020260, Chr07G017790, Chr09G006910, Chr0G004600 ... Chr13G017510, Chr13G017540, Chr19G007370, Chr19G017700, Chr27G009360, Chr31G004590
Poaceae	Thinopyrum elongatum	4	Tel1E01G240800, Tel2E01G460100, Tel4E01G276700 ... Tel5E01G066200
Poaceae	Triticum dicoccoides	8	gene_TRIDC1AG020490, gene_TRIDC1BG024290 ... gene_TRIDC2AG033710, gene_TRIDC2BG038310, gene_TRIDC4AG019950, gene_TRIDC4BG023930, gene_TRIDC5AG004000, gene_TRIDC5BG004140
Poaceae	Triticum aestivum	12	TraesCS1A02G137800.3, TraesCS1B02G149400.2 ... TraesCS1D02G132600.2, TraesCS2A02G248500.1, TraesCS2B02G268700.1, TraesCS2D02G250200.1, TraesCS4A02G139900.1, TraesCS4B02G148000.4, TraesCS4D02G153200.3, TraesCS5A02G027000.1, TraesCS5B02G026200.1, TraesCS5D02G034700.1
Poaceae	Zea mays	4	Zm00001eb026810_P002, Zm00001eb090590_P003 ... Zm00001eb134530_P002, Zm00001eb300350_P001
Poaceae	Zoysia japonica	3	nbis-gene-35742, nbis-gene-42352, nbis-gene-44472
Poaceae	Zoysia macrostachya	4	Zma_g15860, Zma_g17881, Zma_g25364, Zma_g4759
Portulacaceae	Portulaca oleracea	8	evm.TU.LG01.870, evm.TU.LG04.2760, evm.TU.LG04.3200 ... evm.TU.LG08.423, evm.TU.LG16.404, evm.TU.LG19.1110, evm.TU.LG23.144, evm.TU.LG24.1111
Posidoniaceae	Posidonia oceanica	3	gene.Posoc03g00190, gene.Posoc05g04310, gene.Posoc06g08640
Rhizophoraceae	Bruguiera sexangula	6	evm.TU.Scaffold_13_RagTag.560, evm.TU.Scaffold_16_RagTag.22 ... evm.TU.Scaffold_1_RagTag.1317, evm.TU.Scaffold_2_RagTag.1072, evm.TU.Scaffold_2_RagTag.1073, evm.TU.Scaffold_8_RagTag.213
Rhizophoraceae	Carallia pectinifolia	6	nbisL1-mrna-10111, nbisL1-mrna-10113, nbisL1-mrna-22236 ... nbisL1-mrna-22269, nbisL1-mrna-30510, nbisL1-mrna-4114
Rhizophoraceae	Ceriops tagal	5	nbisL1-mrna-11243, nbisL1-mrna-13319, nbisL1-mrna-17327 ... nbisL1-mrna-18149, nbisL1-mrna-19322
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-10174, nbisL1-mrna-15946, nbisL1-mrna-17840 ... nbisL1-mrna-20455, nbisL1-mrna-4126
Rhizophoraceae	Kandelia candel	5	evm.TU.utg000009l.604, evm.TU.utg000015l.297 ... evm.TU.utg000016l.389, evm.TU.utg000018l.857, evm.TU.utg000022l.483
Rhizophoraceae	Kandelia obovata	3	Maker00003014, Maker00015233, Maker00017169
Rhizophoraceae	Rhizophora apiculata	6	nbisL1-mrna-12514, nbisL1-mrna-3149, nbisL1-mrna-3626 ... nbisL1-mrna-4215, nbisL1-mrna-7559, nbisL1-mrna-7560
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-11389, nbisL1-mrna-13494, nbisL1-mrna-15234 ... nbisL1-mrna-5682, nbisL1-mrna-6822
Salicaceae	Populus euphratica	7	populus_peu00224, populus_peu02478, populus_peu10782 ... populus_peu12390, populus_peu17229, populus_peu25987, populus_peu26318
Solanaceae	Lycium barbarum	4	gene-LOC132603622, gene-LOC132603822, gene-LOC132631635 ... gene-LOC132634695
Solanaceae	Solanum chilense	3	SOLCI000958500, SOLCI001556500, SOLCI003648000
Solanaceae	Solanum pennellii	3	gene-LOC107023873, gene-LOC107027916, gene-LOC107031377
Tamaricaceae	Reaumuria soongarica	5	gene_11654, gene_13537, gene_15447, gene_15448, gene_3657
Tamaricaceae	Tamarix chinensis	5	TC01G4483, TC06G0156, TC06G1181, TC09G0663, TC11G1297
Zosteraceae	Zostera marina	3	Zosma03g27640.v3.1, Zosma04g00580.v3.1, Zosma04g01490.v3.1