Basic Information
Locus ID:
CH03.4258
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 51785286 | 51789788 | + | CH03.4258 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.36 | 77,585.56 Da | 38.52 | 84.50 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 25 | 65 | 2.0E-8 | IPR013210 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 417 | 684 | 2.7E-39 | IPR001245 |
| Pfam | PF13855 | Leucine rich repeat | 114 | 173 | 1.9E-10 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 393 | 684 | 1.25E-68 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 24 | 239 | 3.11E-39 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 491 | 706 | 5.2E-55 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 24 | 254 | 6.2E-48 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 374 | 490 | 2.4E-24 | - |
| SMART | SM00369 | LRR_typ_2 | 90 | 115 | 50.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 184 | 206 | 400.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 160 | 183 | 19.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 137 | 159 | 15.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 139 | 160 | 7.465533 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 413 | 687 | 35.170353 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 419 | 442 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 242 | 262 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53730.1 | STRUBBELIG-receptor family 6. | 1.4E-210 |
| RefSeq | XP_004958321.1 | protein STRUBBELIG-RECEPTOR FAMILY 7 [Setaria italica] | 0 |
| Q9C8M9 | Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana OX=3702 GN=SRF6 PE=1 SV=1 | 1.35E-209 | |
| TrEMBL | K3ZR40 | Protein kinase domain-containing protein OS=Setaria italica OX=4555 GN=101769828 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology