Basic Information
Locus ID:
CH03.4256
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 51776930 | 51777754 | - | CH03.4256 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 28,404.07 Da | 57.06 | 70.98 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 106 | 149 | 3.83505E-16 | - |
| Pfam | PF13639 | Ring finger domain | 105 | 149 | 3.5E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 102 | 159 | 5.89E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 80 | 153 | 2.5E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 107 | 148 | 4.7E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 107 | 149 | 12.54829 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 232 | 274 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72310.1 | RING/U-box superfamily protein. Encodes a putative RING-H2 zinc finger protein ATL3 (ATL3). | 2.94E-20 |
| RefSeq | XP_039796763.1 | E3 ubiquitin-protein ligase EL5-like [Panicum virgatum] | 6.08E-121 |
| Q9XF63 | RING-H2 finger protein ATL3 OS=Arabidopsis thaliana OX=3702 GN=ATL3 PE=2 SV=1 | 2.88E-19 | |
| TrEMBL | A0A1E5WN55 | RING-type domain-containing protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0000160 PE=4 SV=1 | 1.63E-124 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology