HalophFGD

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Basic Information
Locus ID: CH03.4240
Species & Taxonomic ID: Echinochloa crus-galli & 90397
Genome Assembly: GWHBDNR00000000
Description: Protein of unknown function (DUF1668)
Maps and Mapping Data
Chromosome Start End Strand ID
CH03 51621777 51623063 - CH03.4240
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
7.99 47,335.63 Da 59.51 79.93 -0.22
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF07893 Protein of unknown function (DUF1668) 5 379 3.6E-90 IPR012871
Best hit
Source Best Hit ID Description E-value
RefSeq XP_025821357.1 uncharacterized protein LOC112897297 [Panicum hallii] 1.27E-85
TrEMBL K4A263 DUF1618 domain-containing protein OS=Setaria italica OX=4555 PE=4 SV=1 6.18E-141
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Poaceae Echinochloa crus-galli 26 AH01.5374, AH01.549, AH01.564, AH03.3691, AH03.3704, CH01.12 ...
BH01.166, BH01.246, BH01.369, BH03.3974, BH03.3977, BH07.590, CH02.3353, CH03.4141, CH03.4142, CH03.4238, CH03.4239, CH03.4240, CH03.4242, CH03.4244, CH03.4251, CH03.4252, CH07.444, CH07.460, CH09.2578, CH09.2601
Poaceae Eleusine coracana subsp. coracana 22 gene-QOZ80_3AG0208510, gene-QOZ80_3AG0210820 ...
gene-QOZ80_3BG0253610, gene-QOZ80_3BG0256020, gene-QOZ80_7AG0574530, gene-QOZ80_7AG0576210, gene-QOZ80_7AG0577100, gene-QOZ80_7AG0577120, gene-QOZ80_7AG0577150, gene-QOZ80_7AG0577170, gene-QOZ80_7AG0577180, gene-QOZ80_7AG0577220, gene-QOZ80_7BG0605930, gene-QOZ80_7BG0607650, gene-QOZ80_7BG0608510, gene-QOZ80_7BG0608520, gene-QOZ80_7BG0608550, gene-QOZ80_7BG0608560, gene-QOZ80_7BG0608570, gene-QOZ80_7BG0608610, gene-QOZ80_7BG0608620, gene-QOZ80_7BG0608640
Poaceae Hordeum vulgare 2 HORVU.MOREX.r3.2HG0208490.1.CDS1 ...
HORVU.MOREX.r3.3HG0294740.1.CDS1
Poaceae Lolium multiflorum 8 gene-QYE76_002553, gene-QYE76_002781, gene-QYE76_037292 ...
gene-QYE76_059641, gene-QYE76_059651, gene-QYE76_059653, gene-QYE76_063289, gene-QYE76_063310
Poaceae Oryza coarctata 7 Oco05G002870, Oco06G002880, Oco06G025610, Oco09G001310 ...
Oco13G014260, Oco14G014700, Oco22G000390
Poaceae Oryza sativa 18 LOC_Os01g70280.1, LOC_Os01g70290.1, LOC_Os03g01420.1 ...
LOC_Os03g01490.1, LOC_Os03g05370.1, LOC_Os03g05380.1, LOC_Os04g34900.1, LOC_Os04g58030.1, LOC_Os04g58050.1, LOC_Os05g03490.1, LOC_Os05g03520.1, LOC_Os05g23450.2, LOC_Os06g08990.1, LOC_Os06g09020.1, LOC_Os07g45150.1, LOC_Os07g45340.1, LOC_Os09g33890.1, LOC_Os10g08610.1
Poaceae Paspalum vaginatum 5 gene-BS78_01G205300, gene-BS78_07G002900 ...
gene-BS78_07G003300, gene-BS78_10G276800, gene-BS78_10G276900
Poaceae Puccinellia tenuiflora 2 Pt_Chr0101849, Pt_Chr0602412
Poaceae Sporobolus alterniflorus 5 Chr19G002260, Chr24G015290, Chr27G015030, Chr27G015830 ...
Chr28G008790
Poaceae Thinopyrum elongatum 6 Tel2E01G890000, Tel2E01G890400, Tel3E01G168300 ...
Tel3E01G508400, Tel4E01G175100, Tel4E01G176400
Poaceae Triticum dicoccoides 3 gene_TRIDC3AG045890, gene_TRIDC3BG051990 ...
gene_TRIDC4AG032840
Poaceae Triticum aestivum 18 TraesCS2A02G001600.1, TraesCS2A02G543800.1 ...
TraesCS2B02G020700.1.cds1, TraesCS2B02G116500.1, TraesCS2D02G001900.1.cds1, TraesCS2D02G525800.1, TraesCS3A02G096400.1.cds1, TraesCS3A02G320000.1.cds1, TraesCS3B02G112200.1.cds1, TraesCS3B02G346200.1.cds1, TraesCS3B02G346300.1.cds1, TraesCS3D02G096900.1.cds1, TraesCS4A02G206500.1.cds1, TraesCS4D02G106400.1.cds1, TraesCS4D02G106500.1, TraesCS6A02G317400.1.cds1, TraesCS6A02G317800.1.cds1, TraesCS6D02G296800.1.cds1
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