Basic Information
Locus ID:
CH03.4236
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
PB1 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 51597296 | 51601417 | - | CH03.4236 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 112,375.41 Da | 49.63 | 75.36 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06410 | PB1_UP2 | 145 | 239 | 2.27584E-33 | - |
| CDD | cd13999 | STKc_MAP3K-like | 740 | 997 | 1.68226E-106 | - |
| Pfam | PF00564 | PB1 domain | 157 | 227 | 1.9E-10 | IPR000270 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 737 | 996 | 4.0E-64 | IPR001245 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 158 | 241 | 4.41E-14 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 725 | 995 | 1.64E-75 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 822 | 1008 | 1.9E-54 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 727 | 821 | 4.1E-23 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 160 | 240 | 3.6E-5 | - |
| SMART | SM00220 | serkin_6 | 734 | 1000 | 9.7E-58 | IPR000719 |
| SMART | SM00666 | PB1_new | 156 | 241 | 2.8E-15 | IPR000270 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 734 | 1001 | 42.138412 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 859 | 871 | - | IPR008271 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 968 | 990 | 8.8E-15 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 853 | 871 | 8.8E-15 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 816 | 829 | 8.8E-15 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 924 | 946 | 8.8E-15 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 649 | 666 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 640 | 666 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 37 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G16270.1 | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain. | 1.05E-149 |
| RefSeq | XP_034581268.1 | uncharacterized protein LOC117844642 [Setaria viridis] | 0 |
| Q9SAJ2 | RAF-like serine/threonine-protein kinase 20 OS=Arabidopsis thaliana OX=3702 GN=RAF20 PE=1 SV=1 | 3.0E-132 | |
| TrEMBL | A0A4U6W2I2 | Protein kinase domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_2G400400v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology