Basic Information
Locus ID:
CH03.4189
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the universal ribosomal protein uS3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 51296351 | 51297919 | - | CH03.4189 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.68 | 25,776.97 Da | 37.21 | 96.19 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02413 | 40S_S3_KH | 16 | 96 | 4.04008E-52 | - |
| Pfam | PF00189 | Ribosomal protein S3, C-terminal domain | 107 | 189 | 1.9E-24 | IPR001351 |
| Pfam | PF07650 | KH domain | 21 | 94 | 4.6E-12 | IPR004044 |
| SUPERFAMILY | SSF54814 | Prokaryotic type KH domain (KH-domain type II) | 11 | 100 | 1.05E-25 | IPR009019 |
| SUPERFAMILY | SSF54821 | Ribosomal protein S3 C-terminal domain | 94 | 192 | 2.62E-28 | IPR036419 |
| Gene3D | G3DSA:3.30.300.20 | - | 1 | 93 | 2.2E-47 | IPR015946 |
| Gene3D | G3DSA:3.30.1140.32 | - | 94 | 220 | 3.9E-65 | IPR036419 |
| TIGRFAM | TIGR01008 | uS3_euk_arch: ribosomal protein uS3 | 9 | 211 | 1.4E-70 | IPR005703 |
| ProSiteProfiles | PS50823 | Type-2 KH domain profile. | 22 | 93 | 11.104576 | IPR004044 |
| ProSitePatterns | PS00548 | Ribosomal protein S3 signature. | 148 | 184 | - | IPR018280 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G53870.1 | Ribosomal protein S3 family protein. | 8.7E-135 |
| RefSeq | XP_039833518.1 | 40S ribosomal protein S3-2-like [Panicum virgatum] | 9.71E-159 |
| Q9M339 | Small ribosomal subunit protein uS3y OS=Arabidopsis thaliana OX=3702 GN=RPS3B PE=1 SV=1 | 8.35E-134 | |
| TrEMBL | A0A3L6QPF1 | 40S ribosomal protein S3-3-like OS=Panicum miliaceum OX=4540 GN=C2845_PM04G32260 PE=3 SV=1 | 2.2E-157 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology