Basic Information
Locus ID:
CH03.4038
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
eukaryotic translation initiation factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 50125148 | 50128310 | - | CH03.4038 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.62 | 26,877.17 Da | 45.94 | 78.14 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04468 | S1_eIF5A | 174 | 243 | 2.08779E-34 | - |
| Pfam | PF01287 | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 173 | 242 | 1.6E-29 | IPR020189 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 174 | 244 | 1.43E-24 | IPR012340 |
| SUPERFAMILY | SSF50104 | Translation proteins SH3-like domain | 103 | 181 | 1.1E-26 | IPR008991 |
| Gene3D | G3DSA:2.40.50.140 | - | 174 | 246 | 2.3E-34 | - |
| Gene3D | G3DSA:2.30.30.30 | - | 88 | 173 | 4.8E-43 | IPR014722 |
| SMART | SM01376 | eIF_5a_2 | 173 | 242 | 4.6E-35 | IPR020189 |
| TIGRFAM | TIGR00037 | eIF_5A: translation elongation factor IF5A | 105 | 241 | 2.0E-41 | IPR001884 |
| ProSitePatterns | PS00302 | Eukaryotic initiation factor 5A hypusine signature. | 138 | 145 | - | IPR019769 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 101 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 65 | 110 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G13950.1 | eukaryotic elongation factor 5A-1. Encodes eukaryotic translation initiation factor 5A (EIF-5A).In mammalian cells it functions as a shuttle protein that translocates mRNA from the nucleus to cytoplasmic ribosomes. Overexpression results in an increase in both primary and secondary xylem formation. In RNAi suppressed lines, xylem formation is reduced. | 3.48E-94 |
| RefSeq | XP_025800571.1 | eukaryotic translation initiation factor 5A [Panicum hallii] | 5.52E-109 |
| P80639 | Eukaryotic translation initiation factor 5A OS=Zea mays OX=4577 GN=TIF5A PE=1 SV=2 | 1.85E-109 | |
| TrEMBL | A0A811SIF0 | eIF-5a domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS64744 PE=3 SV=1 | 3.64E-108 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology