Basic Information
Locus ID:
CH03.3986
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 49732961 | 49735680 | + | CH03.3986 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.53 | 53,253.37 Da | 52.91 | 82.26 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 25 | 66 | 6.3E-9 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 23 | 260 | 7.19E-15 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 19 | 78 | 2.0E-10 | - |
| SMART | SM00256 | fbox_2 | 25 | 65 | 7.3E-10 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 19 | 65 | 9.576953 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 421 | 445 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 369 | 392 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G49450.1 | F-box and associated interaction domains-containing protein. | 5.23E-8 |
| RefSeq | XP_034580694.1 | putative F-box protein At5g50220 [Setaria viridis] | 1.2E-48 |
| Q9SCL2 | F-box protein At3g49450 OS=Arabidopsis thaliana OX=3702 GN=At3g49450 PE=2 SV=1 | 5.14E-7 | |
| TrEMBL | A0A5J9VRW7 | F-box domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_11508 PE=4 SV=1 | 6.56E-76 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||