Basic Information
Locus ID:
CH03.3896
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 48908532 | 48914343 | + | CH03.3896 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 64,267.13 Da | 58.84 | 59.90 | -0.79 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 68 | 203 | 1.42465E-53 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 70 | 201 | 2.1E-37 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 54 | 207 | 2.15E-49 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 56 | 205 | 2.4E-51 | IPR016135 |
| SMART | SM00212 | ubc_7 | 68 | 208 | 3.7E-51 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 65 | 208 | 44.249084 | IPR000608 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 387 | 404 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 291 | 404 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 299 | 353 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13550.1 | Ubiquitin-conjugating enzyme family protein. Encodes a protein similar to ubiquitin-conjugating enzyme (E2) variant proteins (UEV); lacks catalytic cysteine residue found in ubiquitin-conjugating enzyme E2. Represses photomorphogenesis and induces skotomorphogenesis in the dark. | 1.46E-69 |
| RefSeq | XP_039796653.1 | constitutive photomorphogenesis protein 10 [Panicum virgatum] | 2.18E-104 |
| Q9LJD7 | Constitutive photomorphogenesis protein 10 OS=Arabidopsis thaliana OX=3702 GN=COP10 PE=1 SV=1 | 1.4E-68 | |
| TrEMBL | A0A5J9VRQ3 | UBC core domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_11610 PE=4 SV=1 | 1.34E-169 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 5 | AH03.3479, BH03.3693, CH03.3658, CH03.3896, CH03.3900 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0574250, gene-QOZ80_7BG0605530 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0131570.1.CDS1 |
| Poaceae | Oryza coarctata | 3 | Oco13G002330, Oco13G010850, Oco14G011590 |
| Poaceae | Oryza sativa | 2 | LOC_Os07g07820.1, LOC_Os07g38950.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G326200 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr19G003650, Chr24G011010, Chr27G013620, Chr28G010240 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG023840, gene_TRIDC2BG029300 |
| Poaceae | Triticum aestivum | 2 | TraesCS2A02G187100.1.cds1, TraesCS2D02G200800.1.cds1 |
| Poaceae | Zea mays | 2 | Zm00001eb107550_P001, Zm00001eb325390_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-10513, nbis-gene-606 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g5419, Zma_g6711 |