halophFGD

Basic Information

Locus ID: CH03.3694

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description:

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
CH03	47178340	47180203	-	CH03.3694

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.56	51,947.39 Da	56.02	99.67	-0.10

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	17	53	1.7E-4	IPR001810
SUPERFAMILY	SSF81383	F-box domain	7	54	1.31E-9	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	15	56	1.6E-5	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	57	451	1.9E-7	IPR032675

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT5G56400.1	FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein.	1.89E-9
RefSeq	XP_039772475.1	putative FBD-associated F-box protein At5g56400 isoform X1 [Panicum virgatum]	9.28E-62
Swiss-Prot	Q9FM91	Putative FBD-associated F-box protein At5g56400 OS=Arabidopsis thaliana OX=3702 GN=At5g56400 PE=4 SV=2	1.87E-8
TrEMBL	A0A5J9VSN5	F-box domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_11961 PE=4 SV=1	2.47E-112

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Suaeda glauca	1	Sgl52245
Dunaliellaceae	Dunaliella salina	1	Dusal.0175s00007.v1.0
Poaceae	Echinochloa crus-galli	38	AH01.2194, AH03.3309, AH03.3310, AH03.92, AH03.93, AH03.95 ... AH03.97, AH04.1753, AH04.1754, AH07.1987, AH07.412, BH03.149, BH03.3474, BH03.3493, BH04.1755, BH04.1757, BH05.3281, BH05.3394, BH05.3991, BH07.529, BH07.537, CH02.3867, CH03.150, CH03.151, CH03.211, CH03.3694, CH03.3695, CH03.3705, CH03.3706, CH03.53, CH05.3376, CH05.3385, CH05.3387, CH05.3388, Contig1297.2, Contig1297.4, Contig1297.5, Contig1297.7
Poaceae	Eleusine coracana subsp. coracana	33	gene-QOZ80_2AG0111000, gene-QOZ80_2AG0111010 ... gene-QOZ80_2BG0164450, gene-QOZ80_4BG0348370, gene-QOZ80_5AG0367070, gene-QOZ80_5AG0387690, gene-QOZ80_5BG0415190, gene-QOZ80_5BG0454240, gene-QOZ80_5BG0454250, gene-QOZ80_7AG0553160, gene-QOZ80_7AG0553170, gene-QOZ80_7AG0553180, gene-QOZ80_7AG0553190, gene-QOZ80_7AG0553200, gene-QOZ80_7AG0553230, gene-QOZ80_7AG0553240, gene-QOZ80_7AG0553250, gene-QOZ80_7AG0555680, gene-QOZ80_7AG0559090, gene-QOZ80_7AG0571290, gene-QOZ80_7AG0571560, gene-QOZ80_7BG0584270, gene-QOZ80_7BG0584290, gene-QOZ80_7BG0586650, gene-QOZ80_7BG0590350, gene-QOZ80_7BG0602720, gene-QOZ80_7BG0603220, gene-QOZ80_7BG0603240, gene-QOZ80_7BG0603300, gene-QOZ80_7BG0603320, gene-QOZ80_9AG0684190, gene-QOZ80_9BG0710270, gene-QOZ80_UnG0726170
Poaceae	Hordeum vulgare	7	HORVU.MOREX.r3.1HG0018810.1, HORVU.MOREX.r3.2HG0155620.1 ... HORVU.MOREX.r3.2HG0155680.1, HORVU.MOREX.r3.2HG0156270.1, HORVU.MOREX.r3.2HG0193230.1, HORVU.MOREX.r3.3HG0239610.1.CDS1, HORVU.MOREX.r3.4HG0395620.1.CDS1
Poaceae	Lolium multiflorum	43	gene-QYE76_009425, gene-QYE76_009426, gene-QYE76_009517 ... gene-QYE76_009518, gene-QYE76_009534, gene-QYE76_009536, gene-QYE76_009541, gene-QYE76_009544, gene-QYE76_009829, gene-QYE76_009853, gene-QYE76_010033, gene-QYE76_010968, gene-QYE76_010969, gene-QYE76_010972, gene-QYE76_013861, gene-QYE76_016365, gene-QYE76_016544, gene-QYE76_027139, gene-QYE76_030511, gene-QYE76_030519, gene-QYE76_039830, gene-QYE76_040676, gene-QYE76_043209, gene-QYE76_046139, gene-QYE76_049207, gene-QYE76_049873, gene-QYE76_050043, gene-QYE76_050284, gene-QYE76_050292, gene-QYE76_050294, gene-QYE76_050835, gene-QYE76_056879, gene-QYE76_057719, gene-QYE76_059966, gene-QYE76_064716, gene-QYE76_068849, gene-QYE76_068850, gene-QYE76_068852, gene-QYE76_068879, gene-QYE76_069011, gene-QYE76_071942, gene-QYE76_071955, gene-QYE76_071956
Poaceae	Oryza coarctata	17	Oco01G011170, Oco02G010020, Oco05G025270, Oco12G006760 ... Oco13G001270, Oco13G009520, Oco14G000530, Oco14G001340, Oco14G001350, Oco14G001390, Oco14G004550, Oco14G004690, Oco14G005510, Oco14G010090, Oco14G010100, Oco14G010120, Oco14G010190
Poaceae	Oryza sativa	17	LOC_Os07g02290.1, LOC_Os07g02760.1, LOC_Os07g02770.1 ... LOC_Os07g04980.1, LOC_Os07g12540.1, LOC_Os07g12560.1, LOC_Os07g12590.2, LOC_Os07g12600.1, LOC_Os07g12610.1, LOC_Os07g36320.1, LOC_Os07g36330.1, LOC_Os07g36340.1, LOC_Os07g36360.1, LOC_Os07g36370.1, LOC_Os07g36400.1, LOC_Os07g36520.1, LOC_Os07g36530.1
Poaceae	Paspalum vaginatum	19	gene-BS78_01G085500, gene-BS78_01G128700 ... gene-BS78_02G012100, gene-BS78_02G012600, gene-BS78_02G013000, gene-BS78_02G013100, gene-BS78_02G063900, gene-BS78_02G309000, gene-BS78_03G168100, gene-BS78_04G025300, gene-BS78_04G025600, gene-BS78_05G063000, gene-BS78_05G177100, gene-BS78_05G177300, gene-BS78_05G177400, gene-BS78_06G155700, gene-BS78_09G039500, gene-BS78_10G233600, gene-BS78_10G233800
Poaceae	Puccinellia tenuiflora	31	Pt_Chr0200116, Pt_Chr0200117, Pt_Chr0200122, Pt_Chr0202128 ... Pt_Chr0202173, Pt_Chr0300431, Pt_Chr0303353, Pt_Chr0303382, Pt_Chr0306501, Pt_Chr0307488, Pt_Chr0500492, Pt_Chr0500495, Pt_Chr0500496, Pt_Chr0500498, Pt_Chr0500499, Pt_Chr0500505, Pt_Chr0500509, Pt_Chr0500554, Pt_Chr0500556, Pt_Chr0501507, Pt_Chr0501622, Pt_Chr0501685, Pt_Chr0501735, Pt_Chr0600005, Pt_Chr0600006, Pt_Chr0600018, Pt_Chr0600019, Pt_Chr0600020, Pt_Chr0605107, Pt_Chr0605108, Pt_Chr0605118
Poaceae	Sporobolus alterniflorus	8	Chr07G015770, Chr17G004770, Chr19G018670, Chr24G002210 ... Chr27G001110, Chr27G012420, Chr28G000460, Chr28G008980
Poaceae	Thinopyrum elongatum	12	Tel1E01G164700, Tel1E01G194100, Tel1E01G194300 ... Tel2E01G172600, Tel2E01G474100, Tel2E01G474300, Tel2E01G475800, Tel3E01G151500, Tel3E01G206300, Tel4E01G552700, Tel6E01G181700, Tel7E01G875400
Poaceae	Triticum dicoccoides	16	gene_TRIDC1BG014730, gene_TRIDC2AG037320 ... gene_TRIDC2AG037600, gene_TRIDC2AG037630, gene_TRIDC2AG047080, gene_TRIDC2BG040300, gene_TRIDC2BG040320, gene_TRIDC2BG040520, gene_TRIDC6AG009650, gene_TRIDC7AG066130, gene_TRIDC7AG071420, gene_TRIDC7BG008080, gene_TRIDC7BG059650, gene_TRIDC7BG066540, gene_TRIDC7BG066590, gene_TRIDC7BG066710
Poaceae	Triticum aestivum	35	TraesCS1A02G083900.1.cds1, TraesCS1A02G110700.1 ... TraesCS1A02G436900.1.cds1, TraesCS1A02G437000.1, TraesCS1B02G101200.1, TraesCS2A02G079100.1, TraesCS2A02G263100.1, TraesCS2A02G264200.3, TraesCS2A02G264400.1, TraesCS2A02G342400.1, TraesCS2A02G435800.1, TraesCS2B02G093900.1, TraesCS2B02G277700.1, TraesCS2B02G277900.1, TraesCS2B02G339900.1, TraesCS2B02G457400.1, TraesCS2D02G259500.1, TraesCS2D02G259700.2, TraesCS2D02G260900.1, TraesCS2D02G434100.1, TraesCS3A02G119900.1.cds1, TraesCS3B02G100300.1, TraesCS3B02G139300.1, TraesCS3D02G085200.1, TraesCS3D02G122000.1, TraesCS6A02G078500.1, TraesCS6A02G085500.1, TraesCS6B02G268400.1, TraesCS7A02G473800.1, TraesCS7A02G509700.1, TraesCS7B02G375100.1, TraesCS7B02G419600.1, TraesCS7B02G420000.1, TraesCS7D02G348800.1.cds1, TraesCS7D02G499100.1
Poaceae	Zea mays	3	Zm00001eb116530_P002, Zm00001eb162720_P001 ... Zm00001eb168800_P001
Poaceae	Zoysia japonica	6	nbis-gene-35863, nbis-gene-35864, nbis-gene-35865 ... nbis-gene-50425, nbis-gene-56969, nbis-gene-57498
Poaceae	Zoysia macrostachya	2	Zma_g4686, Zma_g6614
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-19424