Basic Information
Locus ID:
CH03.3687
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
PTP1
Description:
Protein tyrosine phosphatase, catalytic domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 47107821 | 47114024 | - | CH03.3687 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.40 | 89,719.94 Da | 62.17 | 88.58 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 331 | 363 | 4.8E-6 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 488 | 717 | 7.3E-9 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 329 | 370 | 1.44E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 325 | 369 | 4.7E-6 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 481 | 728 | 2.1E-10 | IPR032675 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 328 | 362 | 10.080346 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 267 | 299 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 158 | 186 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 152 | 186 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14710.1 | RNI-like superfamily protein. | 2.61E-9 |
| RefSeq | XP_021308299.1 | F-box/LRR-repeat protein 13 [Sorghum bicolor] | 1.21E-181 |
| Q9LUC4 | F-box/FBD/LRR-repeat protein At3g14710 OS=Arabidopsis thaliana OX=3702 GN=At3g14710 PE=2 SV=1 | 2.59E-8 | |
| TrEMBL | A0A368Q6C8 | F-box domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_2G344500v2 PE=4 SV=1 | 1.03E-194 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH03.3291, BH03.2786, CH03.2982, CH03.3687 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_6AG0529460 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_006671, gene-QYE76_006674, gene-QYE76_006679 |
| Poaceae | Oryza coarctata | 1 | Oco13G009480 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g41300.1 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G493500 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G307800.1, TraesCS5B02G308000.1.cds1 ... |