halophFGD

Basic Information

Locus ID: CH03.3505

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: Reverse transcriptase (RNA-dependent DNA polymerase)

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
CH03	45664663	45673542	+	CH03.3505

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.00	162,842.80 Da	49.55	67.30	-0.59

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16128	Ubl_ATG8	1382	1484	2.20112E-67	-
Pfam	PF02991	Autophagy protein Atg8 ubiquitin like	1384	1487	1.9E-49	IPR004241
Pfam	PF14111	Domain of unknown function (DUF4283)	631	754	1.4E-6	IPR025558
SUPERFAMILY	SSF57756	Retrovirus zinc finger-like domains	553	593	1.28E-5	IPR036875
SUPERFAMILY	SSF56219	DNase I-like	979	1035	8.63E-5	IPR036691
SUPERFAMILY	SSF54236	Ubiquitin-like	1374	1487	3.36E-41	IPR029071
Gene3D	G3DSA:4.10.60.10	-	550	600	1.7E-5	-
Gene3D	G3DSA:3.10.20.90	-	1367	1487	9.7E-57	-
ProSiteProfiles	PS50158	Zinc finger CCHC-type profile.	558	571	8.548371	IPR001878
MobiDBLite	mobidb-lite	consensus disorder prediction	811	847	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	422	456	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	502	526	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	415	457	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	84	111	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	222	265	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	505	525	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	811	833	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	904	929	-	-
Coils	Coil	Coil	1101	1121	-	-

Gene Ontology

Molecular Function:

GO:0003676 (nucleic acid binding) GO:0008270 (zinc ion binding)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT4G21980.2	Ubiquitin-like superfamily protein. Encodes APG8, a component of autophagy conjugation pathway. Delivered to the lumens of vacuole under nitrogen-starvation condition. Highest expression in flowers. mRNA abundance increased during dark-induced carbon starvation. Predominantly cytoplasmic with or without N starvation. Upon concanamycin A the protein accumulates in the central vacuole as punctuate structures that resemble autophagic bodies. This localization is more abundant upon N starvation.	3.79E-57
RefSeq	XP_045087410.1	uncharacterized protein LOC123494946 [Aegilops tauschii subsp. strangulata]	3.01E-86
Swiss-Prot	Q2XPP5	Autophagy-related protein 8A OS=Oryza sativa subsp. indica OX=39946 GN=ATG8A PE=1 SV=1	1.54E-61
TrEMBL	Q5W6F4	Uncharacterized protein OSJNBb0006B22.8 OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBb0006B22.8 PE=4 SV=1	3.86E-159

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	38	AH01.2411, AH01.4053, AH02.2969, AH03.2983, AH03.3482 ... AH04.2168, AH06.1173, AH08.999, AH09.537, BH03.2058, BH04.426, BH05.3451, BH05.741, BH08.1003, CH01.3769, CH01.5060, CH02.2241, CH02.2449, CH03.1722, CH03.3505, CH03.4729, CH03.8, CH04.1398, CH04.2284, CH04.622, CH05.1139, CH05.2408, CH05.2903, CH05.3274, CH05.4118, CH06.1882, CH08.2427, CH08.2782, CH08.766, CH09.130, CH09.3180, CH09.404, CH09.641
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.1HG0033440.1.CDS1 ... HORVU.MOREX.r3.4HG0412720.1.CDS1, HORVU.MOREX.r3.5HG0425570.1.CDS1, HORVU.MOREX.r3.7HG0667800.1.CDS1
Poaceae	Lolium multiflorum	11	gene-QYE76_001489, gene-QYE76_002749, gene-QYE76_005337 ... gene-QYE76_006069, gene-QYE76_015759, gene-QYE76_026176, gene-QYE76_026545, gene-QYE76_034785, gene-QYE76_039367, gene-QYE76_066465, gene-QYE76_067977
Poaceae	Oryza coarctata	11	Oco01G004580, Oco02G011290, Oco04G017380, Oco06G018880 ... Oco07G011460, Oco09G008340, Oco11G000620, Oco13G002610, Oco16G007020, Oco22G009350, Oco24G004440
Poaceae	Oryza sativa	2	LOC_Os04g10890.1, LOC_Os04g47030.1
Poaceae	Paspalum vaginatum	21	gene-BS78_01G375300, gene-BS78_02G114900, gene-BS78_K171700 ... gene-BS78_03G065900, gene-BS78_03G158000, gene-BS78_04G086200, gene-BS78_04G324700, gene-BS78_05G028000, gene-BS78_05G093400, gene-BS78_05G171000, gene-BS78_05G212100, gene-BS78_07G089300, gene-BS78_07G152400, gene-BS78_08G164700, gene-BS78_09G111900, gene-BS78_10G109100, gene-BS78_10G157000, gene-BS78_K215100, gene-BS78_K261200, gene-BS78_K284800, gene-BS78_K333900
Poaceae	Puccinellia tenuiflora	8	Pt_Chr0100538, Pt_Chr0103384, Pt_Chr0200373, Pt_Chr0305788 ... Pt_Chr0504634, Pt_Chr0505848, Pt_Chr0602815, Pt_Chr0604111
Poaceae	Sporobolus alterniflorus	104	Chr01G021880, Chr01G022060, Chr02G016330, Chr02G017390 ... Chr02G020590, Chr02G025200, Chr03G003810, Chr03G006920, Chr03G008040, Chr03G012410, Chr03G013380, Chr04G009130, Chr04G015410, Chr05G007550, Chr05G021150, Chr05G024850, Chr05G030530, Chr06G000770, Chr06G019070, Chr06G019080, Chr06G023450, Chr06G024050, Chr06G025660, Chr06G031580, Chr07G008660, Chr07G016630, Chr07G018320, Chr07G018470, Chr07G023170, Chr08G013330, Chr08G018100, Chr09G007850, Chr09G011380, Chr0G006060, Chr10G013700, Chr10G020240, Chr11G016410, Chr11G018670, Chr11G018680, Chr12G015200, Chr12G026390, Chr12G033140, Chr13G004490, Chr13G014980, Chr13G018070, Chr14G006840, Chr14G007730, Chr14G009620, Chr15G007310, Chr15G016590, Chr15G018160, Chr16G002280, Chr16G003750, Chr16G012450, Chr16G013450, Chr17G005410, Chr17G006200, Chr17G014260, Chr18G004510, Chr18G007630, Chr20G004680, Chr20G005800, Chr20G006250, Chr20G009020, Chr21G011550, Chr21G012860, Chr22G003720, Chr22G003730, Chr22G011380, Chr22G011930, Chr22G012430, Chr23G015670, Chr23G017930, Chr23G019440, Chr24G005360, Chr24G007250, Chr24G008440, Chr25G009660, Chr25G014270, Chr25G014330, Chr25G015030, Chr26G003910, Chr27G001640, Chr27G001650, Chr27G001920, Chr27G003410, Chr27G007890, Chr28G006730, Chr28G009700, Chr29G006940, Chr29G011740, Chr29G011750, Chr30G010560, Chr30G011210, Chr30G015190, Chr30G015840, Chr30G015850, Chr31G002250, Chr31G002260, Chr31G003120, Chr31G003160, Chr31G004970, Chr31G005210, Chr31G006250
Poaceae	Triticum aestivum	2	TraesCS1D02G347600.1.cds1, TraesCS3A02G333800.1
Poaceae	Zea mays	29	Zm00001eb029240_P001, Zm00001eb050450_P001 ... Zm00001eb054780_P001, Zm00001eb059440_P001, Zm00001eb087850_P001, Zm00001eb091020_P001, Zm00001eb099660_P001, Zm00001eb107790_P001, Zm00001eb112050_P001, Zm00001eb112190_P002, Zm00001eb118380_P001, Zm00001eb118390_P001, Zm00001eb131610_P001, Zm00001eb133620_P001, Zm00001eb158410_P001, Zm00001eb195810_P002, Zm00001eb235030_P001, Zm00001eb235540_P001, Zm00001eb250840_P001, Zm00001eb261750_P001, Zm00001eb261780_P001, Zm00001eb292070_P001, Zm00001eb311130_P001, Zm00001eb324580_P001, Zm00001eb356800_P001, Zm00001eb357400_P001, Zm00001eb388420_P001, Zm00001eb408840_P001, Zm00001eb416460_P001