Basic Information
Locus ID:
CH03.3504
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Senescence regulator
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 45662009 | 45662767 | + | CH03.3504 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.27 | 26,248.35 Da | 62.52 | 65.99 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04520 | Senescence regulator | 104 | 251 | 7.9E-23 | IPR007608 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 130 | 204 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 217 | 252 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 228 | 252 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04630.1 | Protein of unknown function, DUF584. | 5.23E-7 |
| RefSeq | XP_039796300.1 | uncharacterized protein LOC120661487 [Panicum virgatum] | 1.59E-45 |
| TrEMBL | A0A8T0VQS8 | AT-hook motif nuclear-localized protein OS=Panicum virgatum OX=38727 GN=PVAP13_2NG510000 PE=4 SV=1 | 3.6E-44 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH03.3147, CH03.3504 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g32810.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G291600 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr19G005710, Chr27G011590 |
| Poaceae | Zea mays | 1 | Zm00001eb322590_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-38322, nbis-gene-900 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g5222, Zma_g6514 |