Basic Information
Locus ID:
CH03.3423
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 44839812 | 44845135 | - | CH03.3423 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.44 | 81,093.50 Da | 67.63 | 64.97 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 685 | 724 | 3.20589E-16 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 684 | 731 | 6.4E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 685 | 730 | 7.42E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 677 | 736 | 1.1E-12 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 686 | 725 | 10.645153 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 408 | 444 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 117 | 155 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 408 | 431 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 209 | 247 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 173 | 193 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 102 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 9.06E-24 |
| RefSeq | XP_034582634.1 | uncharacterized protein LOC117845679 [Setaria viridis] | 0 |
| Q24746 | Protein neuralized OS=Drosophila virilis OX=7244 GN=neur PE=4 SV=1 | 8.94E-7 | |
| TrEMBL | A0A4U6VXU9 | RING-type domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_2G331200v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 3 | COCNU_06G012620, scaffold003286G000010 ... |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103713536 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1100.V1.1 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno13g03960, gene.Cymno17g02610 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate03g13450, gene.Thate04g00290 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.3052, BH03.3225, CH03.3423 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0568220, gene-QOZ80_7BG0599600 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0143100.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_041201 |
| Poaceae | Oryza coarctata | 2 | Oco13G007930, Oco14G008440 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g31650.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G283300, gene-BS78_10G147300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0304128 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr24G007840, Chr27G011280, Chr28G007200 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G424000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG030740, gene_TRIDC2BG034210 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G229600.2, TraesCS2B02G251300.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb105360_P003, Zm00001eb321870_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-956 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g6475 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g07960 |
| Zosteraceae | Zostera marina | 2 | Zosma03g25070.v3.1, Zosma05g20800.v3.1 |