Basic Information
Locus ID:
CH03.3350
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 44256148 | 44257726 | + | CH03.3350 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.61 | 45,983.14 Da | 59.20 | 79.11 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00112 | Papain family cysteine protease | 94 | 184 | 3.6E-25 | IPR000668 |
| Pfam | PF00069 | Protein kinase domain | 263 | 406 | 8.1E-28 | IPR000719 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 96 | 187 | 1.4E-27 | IPR038765 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 191 | 427 | 2.46E-42 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 193 | 262 | 3.4E-5 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 263 | 422 | 3.7E-35 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 80 | 192 | 3.6E-23 | - |
| SMART | SM00645 | pept_c1 | 88 | 312 | 1.1E-8 | IPR000668 |
| SMART | SM00220 | serkin_6 | 174 | 406 | 1.5E-25 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 166 | 406 | 21.050486 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 272 | 284 | - | IPR008271 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54940.3 | - | 2.62E-33 |
| RefSeq | XP_004959670.1 | probable cysteine protease RD19D [Setaria italica] | 1.06E-47 |
| Q8VYS0 | Probable cysteine protease RD19D OS=Arabidopsis thaliana OX=3702 GN=RD19D PE=2 SV=1 | 1.51E-31 | |
| TrEMBL | A0A1E5VMD2 | Putative cyclin-dependent kinase F-2 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0012689 PE=3 SV=1 | 6.63E-84 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology