halophFGD

Basic Information

Locus ID: CH03.3349

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description:

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
CH03	44236253	44244160	+	CH03.3349

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.68	118,674.00 Da	64.19	91.33	-0.09

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF81383	F-box domain	114	167	1.32E-6	IPR036047
MobiDBLite	mobidb-lite	consensus disorder prediction	762	784	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_039825531.1	uncharacterized protein LOC120687580 [Panicum virgatum]	8.97E-178
TrEMBL	A0A8T0WHG5	F-box domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_2KG425000 PE=4 SV=1	2.03E-176

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	17	AH03.2980, AH03.3016, AH03.3734, BH03.3179, BH03.3186 ... BH03.4012, BH03.4013, BH03.4260, CH02.1632, CH03.3342, CH03.3348, CH03.3349, CH03.3358, CH03.3373, CH03.4281, CH07.236, CH07.241
Poaceae	Eleusine coracana subsp. coracana	13	gene-QOZ80_1AG0040150, gene-QOZ80_5AG0362280 ... gene-QOZ80_7AG0567200, gene-QOZ80_7AG0567380, gene-QOZ80_7AG0567490, gene-QOZ80_7AG0577600, gene-QOZ80_7BG0598680, gene-QOZ80_7BG0598840, gene-QOZ80_7BG0598930, gene-QOZ80_7BG0601540, gene-QOZ80_8AG0640840, gene-QOZ80_8AG0640850, gene-QOZ80_8BG0643680
Poaceae	Hordeum vulgare	14	HORVU.MOREX.r3.1HG0084540.1, HORVU.MOREX.r3.2HG0195010.1 ... HORVU.MOREX.r3.2HG0188030.1.CDS1, HORVU.MOREX.r3.4HG0395670.1, HORVU.MOREX.r3.4HG0415360.1, HORVU.MOREX.r3.4HG0418200.1, HORVU.MOREX.r3.6HG0632570.1, HORVU.MOREX.r3.7HG0731450.1, HORVU.MOREX.r3.7HG0737880.1, HORVU.MOREX.r3.7HG0745040.1.CDS1, HORVU.MOREX.r3.7HG0745200.1, HORVU.MOREX.r3.7HG0745250.1, HORVU.MOREX.r3.7HG0745320.1, HORVU.MOREX.r3.7HG0745500.1
Poaceae	Lolium multiflorum	36	gene-QYE76_000424, gene-QYE76_001664, gene-QYE76_003032 ... gene-QYE76_006384, gene-QYE76_006396, gene-QYE76_006472, gene-QYE76_006476, gene-QYE76_025646, gene-QYE76_026198, gene-QYE76_036283, gene-QYE76_036711, gene-QYE76_036712, gene-QYE76_036713, gene-QYE76_036716, gene-QYE76_036719, gene-QYE76_036720, gene-QYE76_041359, gene-QYE76_049657, gene-QYE76_059691, gene-QYE76_059693, gene-QYE76_060055, gene-QYE76_071578, gene-QYE76_071580, gene-QYE76_071595, gene-QYE76_071600, gene-QYE76_071606, gene-QYE76_071634, gene-QYE76_071635, gene-QYE76_071697, gene-QYE76_071698, gene-QYE76_071704, gene-QYE76_071731, gene-QYE76_071733, gene-QYE76_071734, gene-QYE76_071799, gene-QYE76_071861
Poaceae	Oryza coarctata	1	Oco13G009530
Poaceae	Oryza sativa	1	LOC_Os12g36000.1
Poaceae	Paspalum vaginatum	4	gene-BS78_02G277100, gene-BS78_02G277800 ... gene-BS78_02G277900, gene-BS78_06G208700
Poaceae	Puccinellia tenuiflora	18	Pt_Chr0100991, Pt_Chr0100992, Pt_Chr0106729, Pt_Chr0106914 ... Pt_Chr0106915, Pt_Chr0300155, Pt_Chr0303262, Pt_Chr0303312, Pt_Chr0306558, Pt_Chr0401318, Pt_Chr0401613, Pt_Chr0401615, Pt_Chr0401618, Pt_Chr0401619, Pt_Chr0401620, Pt_Chr0401621, Pt_Chr0404054, Pt_Chr0701494
Poaceae	Sporobolus alterniflorus	4	Chr0G002260, Chr24G005000, Chr28G006610, Chr28G006620
Poaceae	Thinopyrum elongatum	23	Tel2E01G573100, Tel2E01G761200, Tel2E01G785900 ... Tel3E01G652100, Tel4E01G552600, Tel4E01G597600, Tel4E01G598200, Tel5E01G045400, Tel5E01G104300, Tel6E01G160800, Tel7E01G598300, Tel7E01G806500, Tel7E01G808300, Tel7E01G808800, Tel7E01G810100, Tel7E01G851100, Tel7E01G899500, Tel7E01G901500, Tel7E01G901700, Tel7E01G901900, Tel7E01G902000, Tel7E01G902100, Tel7E01G902900
Poaceae	Triticum dicoccoides	18	gene_TRIDC2AG047970, gene_TRIDC2BG050460 ... gene_TRIDC2BG071150, gene_TRIDC4BG060960, gene_TRIDC4BG060990, gene_TRIDC5AG075660, gene_TRIDC5AG075680, gene_TRIDC5BG008230, gene_TRIDC5BG078890, gene_TRIDC7AG072750, gene_TRIDC7AG072880, gene_TRIDC7AG072920, gene_TRIDC7BG041510, gene_TRIDC7BG060240, gene_TRIDC7BG060300, gene_TRIDC7BG068870, gene_TRIDC7BG068910, gene_TRIDC7BG069090
Poaceae	Triticum aestivum	52	TraesCS2A02G333300.1, TraesCS2A02G465500.1 ... TraesCS2B02G469900.1, TraesCS2B02G487000.1, TraesCS2B02G487100.1, TraesCS2D02G327500.1, TraesCS2D02G448100.1, TraesCS2D02G465900.2, TraesCS3A02G410300.1, TraesCS3A02G410400.1, TraesCS3B02G443700.1, TraesCS3D02G405000.1, TraesCS3D02G405100.1, TraesCS4B02G364600.1, TraesCS4B02G365200.1, TraesCS4B02G365300.1, TraesCS4B02G393800.1, TraesCS5A02G533800.3, TraesCS5B02G049300.1, TraesCS5D02G055200.1, TraesCS6A02G066700.1, TraesCS7A02G374600.1, TraesCS7A02G497700.1, TraesCS7A02G518600.1, TraesCS7A02G518700.1, TraesCS7A02G519100.1, TraesCS7A02G519300.1, TraesCS7A02G519400.1, TraesCS7A02G519900.1, TraesCS7B02G225700.1, TraesCS7B02G252800.1, TraesCS7B02G379200.1, TraesCS7B02G433600.1.cds1, TraesCS7B02G434600.1, TraesCS7B02G434900.1, TraesCS7B02G435200.1, TraesCS7B02G435400.1, TraesCS7B02G436000.1, TraesCS7B02G436300.1, TraesCS7D02G141800.1, TraesCS7D02G321600.1, TraesCS7D02G464500.1, TraesCS7D02G465100.1, TraesCS7D02G485000.1, TraesCS7D02G508300.1, TraesCS7D02G508500.1, TraesCS7D02G508600.1, TraesCS7D02G509000.1, TraesCS7D02G509600.1, TraesCSU02G117400.1, TraesCSU02G138500.1, TraesCSU02G139200.1
Poaceae	Zea mays	1	Zm00001eb105050_P001
Poaceae	Zoysia japonica	3	nbis-gene-1023, nbis-gene-32928, nbis-gene-32976
Poaceae	Zoysia macrostachya	2	Zma_g5574, Zma_g6436