Basic Information
Locus ID:
CH03.3284
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 43711980 | 43717101 | + | CH03.3284 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.00 | 82,676.71 Da | 60.62 | 79.20 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 21 | 55 | 7.8E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 19 | 77 | 5.1E-9 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 20 | 61 | 5.5E-5 | - |
| ProSiteProfiles | PS50181 | F-box domain profile. | 19 | 55 | 10.10684 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 675 | 698 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G13985.1 | FBD-associated F-box protein. | 3.18E-9 |
| RefSeq | XP_044328036.1 | putative F-box/LRR-repeat protein At5g02930 [Triticum aestivum] | 9.29E-43 |
| Q4PSI6 | FBD-associated F-box protein At4g13985 OS=Arabidopsis thaliana OX=3702 GN=At4g13985 PE=2 SV=1 | 3.15E-8 | |
| TrEMBL | A0A835FHZ0 | FBD domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_010303 PE=4 SV=1 | 8.06E-53 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 7 | AH03.3573, AH05.688, BH03.3781, CH03.3284, CH03.4006 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0005700, gene-QOZ80_1BG0054350 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.2HG0204110.1, HORVU.MOREX.r3.5HG0531250.1 ... |
| Poaceae | Lolium multiflorum | 10 | gene-QYE76_013401, gene-QYE76_035003, gene-QYE76_035004 ... |
| Poaceae | Oryza coarctata | 4 | Oco02G006680, Oco02G006740, Oco10G000410, Oco10G010300 |
| Poaceae | Oryza sativa | 5 | LOC_Os01g14270.1, LOC_Os05g01620.1, LOC_Os05g39660.1 ... |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G001500 |
| Poaceae | Puccinellia tenuiflora | 15 | Pt_Chr0102173, Pt_Chr0102191, Pt_Chr0102968, Pt_Chr0105483 ... |
| Poaceae | Thinopyrum elongatum | 16 | Tel1E01G111800, Tel2E01G973400, Tel3E01G038200 ... |
| Poaceae | Triticum dicoccoides | 15 | gene_TRIDC1AG002220, gene_TRIDC2AG078630 ... |
| Poaceae | Triticum aestivum | 46 | TraesCS1A02G022900.1, TraesCS1A02G051600.1 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-18401 |