Basic Information
Locus ID:
CH03.323
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 4574485 | 4577960 | - | CH03.323 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.31 | 46,096.88 Da | 45.48 | 96.29 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 40 | 80 | 7.5E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 37 | 86 | 1.44E-11 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 186 | 337 | 8.63E-8 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 25 | 81 | 6.7E-6 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 167 | 390 | 9.4E-7 | IPR032675 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80960.5 | - | 1.72E-13 |
| RefSeq | XP_039796474.1 | putative FBD-associated F-box protein At5g50270 [Panicum virgatum] | 1.07E-226 |
| Q9SAG4 | F-box protein At1g80960 OS=Arabidopsis thaliana OX=3702 GN=At1g80960 PE=2 SV=3 | 2.27E-12 | |
| TrEMBL | A0A8T0VY15 | F-box domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_2KG048400 PE=4 SV=1 | 1.6E-221 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH03.203, CH03.323 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0629230.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_041302, gene-QYE76_041311 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G031700, gene-BS78_02G031800 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0404642, Pt_Chr0404705, Pt_Chr0604369 |
| Poaceae | Thinopyrum elongatum | 4 | Tel6E01G701900, Tel6E01G702100, Tel6E01G702600 ... |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG057750, gene_TRIDC6BG067240 |
| Poaceae | Triticum aestivum | 7 | TraesCS6A02G389500.1, TraesCS6A02G390000.1 ... |