Basic Information
Locus ID:
CH03.3185
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
DWNN domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 42969007 | 42970392 | - | CH03.3185 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.66 | 48,046.67 Da | 59.79 | 52.47 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16620 | vRING-HC-C4C4_RBBP6 | 217 | 257 | 6.34093E-9 | - |
| Pfam | PF08783 | DWNN domain | 3 | 82 | 5.4E-15 | IPR014891 |
| Pfam | PF13696 | Zinc knuckle | 160 | 180 | 9.2E-10 | IPR025829 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 147 | 183 | 5.76E-5 | IPR036875 |
| SUPERFAMILY | SSF57850 | RING/U-box | 214 | 284 | 3.0E-9 | - |
| Gene3D | G3DSA:4.10.60.10 | - | 158 | 206 | 5.3E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 214 | 285 | 1.0E-9 | IPR013083 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 84 | 1.7E-14 | - |
| SMART | SM01180 | DWNN_2 | 3 | 82 | 6.0E-29 | IPR014891 |
| ProSiteProfiles | PS51282 | DWNN domain profile. | 3 | 82 | 13.67944 | IPR014891 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 288 | 369 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 195 | 211 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 192 | 211 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 296 | 351 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 89 | 119 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 134 | 158 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 134 | 154 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 89 | 103 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47430.3 | DWNN domain, a CCHC-type zinc finger. | 9.6E-40 |
| RefSeq | XP_034570947.1 | E3 ubiquitin ligase PQT3-like [Setaria viridis] | 5.8E-169 |
| B9DFV2 | E3 ubiquitin ligase PQT3-like OS=Arabidopsis thaliana OX=3702 GN=At5g47430 PE=1 SV=1 | 1.06E-37 | |
| TrEMBL | A0A8T0MZB6 | DWNN domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_9NG592496 PE=4 SV=1 | 3.25E-167 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology