Basic Information
Locus ID:
CH03.2982
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 41320115 | 41322034 | + | CH03.2982 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.02 | 56,377.21 Da | 57.43 | 86.97 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 21 | 56 | 2.7E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 19 | 64 | 1.7E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 21 | 59 | 2.5E-7 | - |
| SMART | SM00256 | fbox_2 | 25 | 65 | 0.0042 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 19 | 55 | 9.576953 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G59000.1 | F-box/RNI-like superfamily protein. | 2.48E-9 |
| RefSeq | XP_039797779.1 | putative F-box/LRR-repeat protein At3g28410 [Panicum virgatum] | 1.39E-210 |
| Q2V3N5 | F-box protein At3g59000 OS=Arabidopsis thaliana OX=3702 GN=At3g59000 PE=1 SV=2 | 2.46E-8 | |
| TrEMBL | A0A3L6T9X2 | F-box domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM03G03530 PE=4 SV=1 | 6.98E-220 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH03.3291, BH03.2786, CH03.2982, CH03.3687 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_6AG0529460 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_006671, gene-QYE76_006674, gene-QYE76_006679 |
| Poaceae | Oryza coarctata | 1 | Oco13G009480 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g41300.1 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G493500 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G307800.1, TraesCS5B02G308000.1.cds1 ... |