Basic Information
Locus ID:
CH03.2849
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
tRNA-splicing endonuclease subunit sen54 N-term
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 40227044 | 40228868 | + | CH03.2849 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.15 | 30,008.64 Da | 46.79 | 77.63 | -0.29 |
Protein Domain:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G57360.1 | 1.1E-53 | |
| RefSeq | XP_004959587.1 | uncharacterized protein LOC101783993 isoform X2 [Setaria italica] | 5.25E-159 |
| TrEMBL | K3ZVY9 | tRNA_int_end_N2 domain-containing protein OS=Setaria italica OX=4555 GN=101783993 PE=3 SV=1 | 1.19E-157 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg31336, jg33249 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5073 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah013139, Ah035191 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g153400 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg14365, Sbi_jg42973, Sbi_jg45580, Sbi_jg53592 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg10206, Seu_jg11431 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00002107, GOSA_00014241, GOSA_00025643 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl35648, Sgl35655, Sgl35696, Sgl40986, Sgl40994, Sgl41003 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000002922, gene:ENSEOMG00000006306 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.6AG0000660 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30166310, pistato.v30186120, pistato.v30186170 |
| Apiaceae | Apium graveolens | 2 | Ag10G02338, Ag4G01682 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G008520 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_07.3472.V1.1, AsparagusV1_07.3473.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G32844 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G02370.2, AT3G57360.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10006455m.g.v1.0, Thhalv10008553m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g05240.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g031070.2N, BniB05p000032.2N, BniB08g072070.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1025 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G1156, Cgl04G1165 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g02580 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g10920 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2568 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00006733 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G07576 |
| Poaceae | Echinochloa crus-galli | 2 | BH03.2642, CH03.2849 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0540700, gene-QOZ80_6BG0493940 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0493400.1, HORVU.MOREX.r3.5HG0493430.1 |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_006450, gene-QYE76_056380, gene-QYE76_056382 ... |
| Poaceae | Oryza coarctata | 2 | Oco17G008740, Oco18G008820 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g32700.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G232400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0701470, Pt_Chr0701483 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr10G015020, Chr11G007270, Chr15G000470 |
| Poaceae | Thinopyrum elongatum | 4 | Tel5E01G449700, Tel5E01G450000, Tel5E01G450700 ... |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC1BG047790, gene_TRIDC5AG042380 ... |
| Poaceae | Triticum aestivum | 8 | TraesCS1B02G290300.1, TraesCS1D02G280400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb102310_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-10378 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g30592 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.1170, evm.TU.LG14.507, evm.TU.LG25.1274 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g11720 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.572 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-24263, nbisL1-mrna-30497, nbisL1-mrna-8996 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11233 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15958 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.307 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015736 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-4225, nbisL1-mrna-4227 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-15219, nbisL1-mrna-15220 |
| Salicaceae | Populus euphratica | 2 | populus_peu09754, populus_peu24736 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132607480 |
| Solanaceae | Solanum chilense | 2 | SOLCI002339600, SOLCI006284800 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002559, gene-LOC107013943 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_11873 |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G1889 |
| Zosteraceae | Zostera marina | 1 | Zosma06g10790.v3.1 |