Basic Information
Locus ID:
CH03.2739
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
histone H2A K63-linked deubiquitination
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 39433348 | 39440931 | - | CH03.2739 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.75 | 238,715.72 Da | 49.81 | 67.87 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02667 | Peptidase_C19K | 1260 | 1624 | 2.74844E-58 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 1260 | 1623 | 1.0E-37 | IPR001394 |
| Pfam | PF14551 | MCM N-terminal domain | 1702 | 1789 | 2.3E-5 | IPR027925 |
| Pfam | PF02148 | Zn-finger in ubiquitin-hydrolases and other protein | 117 | 177 | 2.0E-9 | IPR001607 |
| Pfam | PF02148 | Zn-finger in ubiquitin-hydrolases and other protein | 1046 | 1106 | 1.6E-9 | IPR001607 |
| Pfam | PF02148 | Zn-finger in ubiquitin-hydrolases and other protein | 864 | 924 | 8.6E-9 | IPR001607 |
| Pfam | PF02148 | Zn-finger in ubiquitin-hydrolases and other protein | 682 | 742 | 8.6E-9 | IPR001607 |
| Pfam | PF02148 | Zn-finger in ubiquitin-hydrolases and other protein | 411 | 471 | 1.6E-9 | IPR001607 |
| SUPERFAMILY | SSF57850 | RING/U-box | 864 | 923 | 1.04E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 411 | 470 | 2.12E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 1046 | 1105 | 2.12E-9 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 1258 | 1625 | 2.35E-68 | IPR038765 |
| SUPERFAMILY | SSF57850 | RING/U-box | 117 | 176 | 3.77E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 682 | 741 | 1.04E-8 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 1253 | 1633 | 3.8E-71 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 615 | 758 | 2.3E-9 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 344 | 478 | 1.9E-10 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 797 | 940 | 2.3E-9 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 50 | 184 | 3.3E-10 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 979 | 1113 | 1.9E-10 | IPR013083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 1259 | 1626 | 39.745632 | IPR028889 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 670 | 743 | 11.642471 | IPR001607 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 105 | 178 | 11.642471 | IPR001607 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 1034 | 1107 | 11.905407 | IPR001607 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 399 | 472 | 11.905407 | IPR001607 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 852 | 925 | 11.642471 | IPR001607 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 1558 | 1575 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 1260 | 1275 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1119 | 1140 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 190 | 211 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1024 | 1043 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 484 | 505 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 544 | 602 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1175 | 1245 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 948 | 966 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 948 | 967 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1450 | 1494 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 481 | 505 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 766 | 785 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1221 | 1239 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 766 | 784 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1179 | 1205 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1116 | 1140 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 239 | 265 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1462 | 1494 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 540 | 602 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 272 | 291 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 187 | 211 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 38 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04860.1 | ubiquitin-specific protease 2. Encodes a ubiquitin-specific protease. | 8.63E-26 |
| RefSeq | XP_045083258.1 | uncharacterized protein LOC109742632 [Aegilops tauschii subsp. strangulata] | 1.34E-251 |
| Q8W4N3 | Ubiquitin carboxyl-terminal hydrolase 2 OS=Arabidopsis thaliana OX=3702 GN=UBP2 PE=1 SV=2 | 8.58E-25 | |
| TrEMBL | A0A453H4J1 | Ubiquitin carboxyl-terminal hydrolase OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 3.04E-250 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||