Basic Information
Locus ID:
CH03.2673
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ubiquitin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 38709907 | 38710497 | + | CH03.2673 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 20,934.36 Da | 45.90 | 80.66 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 9 | 74 | 0.00159934 | - |
| Pfam | PF00240 | Ubiquitin family | 12 | 77 | 1.4E-6 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 92 | 8.29E-11 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 1.1E-10 | - |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 81 | 12.552728 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 107 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G05230.1 | Ubiquitin-like superfamily protein. | 7.49E-20 |
| RefSeq | XP_025802033.1 | uncharacterized protein LOC112881515 [Panicum hallii] | 7.55E-97 |
| TrEMBL | A0A1E5WIZ4 | Ubiquitin-like domain-containing protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0001607 PE=4 SV=1 | 2.06E-100 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10029513m.g.v1.0 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.2349, BH03.2480, CH03.2673 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0539190, gene-QOZ80_6BG0492510 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0489850.1.CDS1 |
| Poaceae | Oryza coarctata | 1 | Oco17G007580 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g30390.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G220400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0701629 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr0G015850, Chr14G016030, Chr21G015060 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G412500 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC5AG040400 |
| Poaceae | Triticum aestivum | 2 | TraesCS5A02G258000.1.cds1, TraesCS5B02G257200.1.cds1 |
| Poaceae | Zea mays | 1 | Zm00001eb101690_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-10485 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g30519 |