Basic Information
Locus ID:
CH03.2651
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
F-box associated domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 38501556 | 38504412 | + | CH03.2651 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.26 | 59,049.34 Da | 57.35 | 83.10 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 12 | 50 | 5.9E-8 | IPR001810 |
| Pfam | PF08268 | F-box associated domain | 208 | 311 | 1.4E-7 | IPR013187 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 103 | 330 | 8.76E-11 | IPR011043 |
| SUPERFAMILY | SSF81383 | F-box domain | 8 | 67 | 4.84E-13 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 8 | 60 | 8.7E-9 | - |
| Gene3D | G3DSA:2.120.10.80 | - | 144 | 346 | 6.5E-6 | IPR015915 |
| SMART | SM00256 | fbox_2 | 14 | 54 | 8.2E-4 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 104 | 332 | 3.6E-33 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 8 | 55 | 10.159829 | IPR001810 |
| Coils | Coil | Coil | 399 | 426 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G07870.1 | F-box and associated interaction domains-containing protein. | 1.54E-20 |
| RefSeq | XP_039834593.1 | putative F-box protein At3g17500 [Panicum virgatum] | 2.74E-153 |
| Q9SFC7 | F-box protein At3g07870 OS=Arabidopsis thaliana OX=3702 GN=At3g07870 PE=2 SV=1 | 1.52E-19 | |
| TrEMBL | K4A337 | F-box domain-containing protein OS=Setaria italica OX=4555 PE=4 SV=1 | 1.54E-203 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology