Basic Information
Locus ID:
CH03.2648
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
F-box-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 38473794 | 38482092 | + | CH03.2648 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.74 | 112,506.96 Da | 45.93 | 85.95 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 20 | 58 | 5.9E-6 | IPR001810 |
| Pfam | PF08268 | F-box associated domain | 218 | 313 | 4.9E-8 | IPR013187 |
| SUPERFAMILY | SSF81383 | F-box domain | 18 | 75 | 7.33E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 5 | 102 | 2.5E-7 | - |
| SMART | SM00256 | fbox_2 | 22 | 62 | 7.8E-4 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 823 | 966 | 2.1E-21 | IPR017451 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 112 | 340 | 4.4E-29 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 16 | 63 | 8.755626 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 754 | 785 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 759 | 773 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G09190.1 | F-box and associated interaction domains-containing protein. | 3.13E-13 |
| RefSeq | XP_021308736.1 | F-box protein At3g07870-like isoform X2 [Sorghum bicolor] | 3.72E-183 |
| Q9M0Q9 | Putative F-box protein At4g09190 OS=Arabidopsis thaliana OX=3702 GN=At4g09190 PE=4 SV=1 | 3.09E-12 | |
| TrEMBL | A0A5J9TFG6 | F-box domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_43446 PE=4 SV=1 | 2.15E-189 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology