Basic Information
Locus ID:
CH03.2627
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 38325160 | 38339408 | + | CH03.2627 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.98 | 62,845.65 Da | 49.98 | 92.54 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02440 | AdoMet_MTases | 375 | 501 | 1.10352E-8 | - |
| Pfam | PF01189 | 16S rRNA methyltransferase RsmB/F | 367 | 561 | 1.3E-51 | IPR001678 |
| Pfam | PF01029 | NusB family | 132 | 239 | 2.0E-19 | IPR006027 |
| SUPERFAMILY | SSF48013 | NusB-like | 136 | 273 | 1.05E-22 | IPR035926 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 261 | 563 | 3.28E-64 | IPR029063 |
| Gene3D | G3DSA:3.30.70.1170 | Sun protein; domain 3 | 256 | 361 | 1.6E-10 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 362 | 566 | 9.5E-61 | - |
| Gene3D | G3DSA:1.10.940.10 | - | 98 | 247 | 2.3E-21 | IPR035926 |
| TIGRFAM | TIGR00563 | rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase | 143 | 563 | 2.4E-84 | IPR004573 |
| ProSiteProfiles | PS51686 | SAM-dependent MTase RsmB/NOP-type domain profile. | 289 | 564 | 55.160576 | IPR001678 |
| PRINTS | PR02008 | RNA (C5-cytosine) methyltransferase signature | 546 | 563 | 2.0E-24 | IPR023267 |
| PRINTS | PR02008 | RNA (C5-cytosine) methyltransferase signature | 348 | 362 | 2.0E-24 | IPR023267 |
| PRINTS | PR02008 | RNA (C5-cytosine) methyltransferase signature | 377 | 387 | 2.0E-24 | IPR023267 |
| PRINTS | PR02009 | Viridiplantae FMU-related RCMT signature | 106 | 129 | 5.1E-35 | IPR023268 |
| PRINTS | PR02009 | Viridiplantae FMU-related RCMT signature | 246 | 259 | 5.1E-35 | IPR023268 |
| PRINTS | PR02008 | RNA (C5-cytosine) methyltransferase signature | 445 | 457 | 2.0E-24 | IPR023267 |
| PRINTS | PR02009 | Viridiplantae FMU-related RCMT signature | 130 | 146 | 5.1E-35 | IPR023268 |
| PRINTS | PR02009 | Viridiplantae FMU-related RCMT signature | 522 | 534 | 5.1E-35 | IPR023268 |
| PRINTS | PR02008 | RNA (C5-cytosine) methyltransferase signature | 495 | 511 | 2.0E-24 | IPR023267 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 91 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13180.1 | NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein. | 7.45E-237 |
| RefSeq | XP_039795608.1 | probable ribosomal RNA small subunit methyltransferase B [Panicum virgatum] | 0 |
| P94464 | Probable ribosomal RNA small subunit methyltransferase B OS=Bacillus subtilis (strain 168) OX=224308 GN=rsmB PE=3 SV=2 | 1.15E-57 | |
| TrEMBL | A0A8T0VFX5 | 16S rRNA (cytosine(967)-C(5))-methyltransferase OS=Panicum virgatum OX=38727 GN=PVAP13_2NG396000 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg20187 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12131 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah009070 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g090540 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg18530, Sbi_jg36928 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg4805 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017319 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl23572, Sgl28773 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009095, gene:ENSEOMG00000028930 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2BG0001030, CQ.Regalona.r1.4BG0026080 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30153020, pistato.v30154760 |
| Apiaceae | Apium graveolens | 1 | Ag9G01848 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G013560 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103720692, gene-LOC120111926 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2219.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G12432 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G13180.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020504m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g11360.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g055780.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1491 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G1655 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g04230 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0470s00012.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g17210 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.2044 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb2G11870, Lb3G20046, Lb3G20047, Lb4G23470 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.2299, BH03.2094, CH03.2627 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0538740, gene-QOZ80_6BG0491980 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0488940.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_006001 |
| Poaceae | Oryza coarctata | 2 | Oco17G007410, Oco18G007640 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g30100.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G216000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0701708 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr15G016450 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G405200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG039480, gene_TRIDC5BG041910 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G253000.1, TraesCS5B02G251800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb101440_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-19562 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32738 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG16.1660, evm.TU.LG26.5 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc01g28450, gene.Posoc03g08440, gene.Posoc06g19540 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.1648 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-8796, nbisL1-mrna-8797 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-377 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15052 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.36 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002786 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9378 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23755 |
| Salicaceae | Populus euphratica | 1 | populus_peu00894 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132636292 |
| Solanaceae | Solanum chilense | 1 | SOLCI007328500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007700 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.31791_chr09_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G0520 |
| Zosteraceae | Zostera marina | 1 | Zosma03g00130.v3.1 |