Basic Information
Locus ID:
CH03.2547
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
DNA binding domain with preference for A/T rich regions
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 37541102 | 37547363 | + | CH03.2547 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.57 | 109,710.77 Da | 70.14 | 66.27 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd11455 | bHLH_AtAIG1_like | 837 | 909 | 7.68762E-29 | - |
| Pfam | PF00010 | Helix-loop-helix DNA-binding domain | 838 | 884 | 5.5E-10 | IPR011598 |
| SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 838 | 890 | 3.53E-12 | IPR036638 |
| SUPERFAMILY | SSF46565 | Chaperone J-domain | 68 | 144 | 4.53E-5 | IPR036869 |
| Gene3D | G3DSA:4.10.280.10 | - | 833 | 891 | 3.4E-14 | IPR036638 |
| Gene3D | G3DSA:1.10.287.110 | DnaJ domain | 61 | 161 | 3.3E-5 | IPR036869 |
| SMART | SM00353 | finulus | 841 | 890 | 6.2E-12 | IPR011598 |
| ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 835 | 884 | 15.49104 | IPR011598 |
| PRINTS | PR01217 | Proline rich extensin signature | 159 | 180 | 6.3E-16 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 208 | 225 | 6.3E-16 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 231 | 256 | 6.3E-16 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 183 | 199 | 6.3E-16 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 816 | 847 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 157 | 320 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 561 | 618 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 587 | 608 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 161 | 175 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 283 | 320 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 176 | 268 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 723 | 752 | - | - |
| Coils | Coil | Coil | 537 | 557 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G41130.1 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein. | 8.48E-13 |
| RefSeq | XP_004957058.1 | proline-rich extensin-like protein EPR1 [Setaria italica] | 1.73E-167 |
| O80674 | Transcription factor bHLH106 OS=Arabidopsis thaliana OX=3702 GN=BHLH106 PE=2 SV=1 | 8.31E-12 | |
| TrEMBL | A0A1E5W6V6 | J domain-containing protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0006004 PE=4 SV=1 | 7.17E-170 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology