Basic Information
Locus ID:
CH03.2440
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
PHD zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 36548198 | 36550732 | + | CH03.2440 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.83 | 71,362.94 Da | 42.85 | 89.17 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 599 | 656 | 6.87E-13 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 596 | 657 | 1.2E-14 | IPR013083 |
| SMART | SM00249 | PHD_3 | 608 | 654 | 1.2E-5 | IPR001965 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 609 | 653 | - | IPR019786 |
| ProSitePatterns | PS01306 | Uncharacterized protein family UPF0054 signature. | 162 | 172 | - | IPR020549 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22260.1 | RING/FYVE/PHD zinc finger superfamily protein. Sporophytic factor controlling anther and pollen development. Mutants fail to make functional pollen;pollen degeneration occurs after microspore release and the tapetum also appears abnormally vacuolated. Similar to PHD-finger motif transcription factors. | 4.65E-145 |
| RefSeq | XP_025799327.1 | PHD finger protein PERSISTENT TAPETAL CELL 1 [Panicum hallii] | 0 |
| Q67V61 | PHD finger protein PERSISTENT TAPETAL CELL 1 OS=Oryza sativa subsp. japonica OX=39947 GN=PTC1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2S3H0E9 | PHD domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_2G285000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology