Basic Information
Locus ID:
CH03.2353
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
In Between Ring fingers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 35599473 | 35602151 | - | CH03.2353 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.87 | 61,787.52 Da | 52.85 | 64.17 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 338 | 383 | 1.3E-4 | IPR018957 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 488 | 529 | 5.0E-8 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 485 | 530 | 7.42E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 335 | 394 | 1.38E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 333 | 423 | 2.3E-19 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 483 | 555 | 3.6E-11 | - |
| SMART | SM00647 | ibrneu5 | 485 | 543 | 0.19 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 411 | 477 | 2.2E-4 | IPR002867 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 338 | 383 | 9.656702 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 334 | 549 | 24.581631 | IPR044066 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 356 | 365 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G45580.1 | RING/U-box protein with C6HC-type zinc finger. | 1.63E-26 |
| RefSeq | XP_025801584.1 | probable E3 ubiquitin-protein ligase RNF217 [Panicum hallii] | 5.64E-205 |
| Q8TC41 | E3 ubiquitin-protein ligase RNF217 OS=Homo sapiens OX=9606 GN=RNF217 PE=1 SV=4 | 8.58E-15 | |
| TrEMBL | A0A2T8KQM7 | RING-type domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_2G275000 PE=3 SV=1 | 6.34E-197 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH03.2028, BH03.2377, CH03.2352, CH03.2353 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0481110.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_005352, gene-QYE76_005438, gene-QYE76_015362 |
| Poaceae | Oryza coarctata | 2 | Oco17G005570, Oco18G005680 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g26470.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G192700 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G009320, Chr10G009330 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G354700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG034770, gene_TRIDC5BG036480 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G215600.1, TraesCS5B02G214100.1 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-19790 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32591 |