Basic Information
Locus ID:
CH03.2352
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
In Between Ring fingers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 35580430 | 35589123 | - | CH03.2352 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 113,799.78 Da | 51.31 | 71.99 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 924 | 1004 | 2.1E-22 | IPR026960 |
| SUPERFAMILY | SSF57850 | RING/U-box | 497 | 531 | 4.24E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 338 | 391 | 1.1E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 335 | 425 | 1.3E-15 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 485 | 553 | 1.4E-10 | - |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 336 | 550 | 21.723814 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 340 | 385 | 9.258371 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 358 | 367 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 72 | 97 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G45470.1 | IBR domain containing protein. | 6.94E-30 |
| RefSeq | XP_039797710.1 | uncharacterized protein LOC120662681 [Panicum virgatum] | 1.76E-164 |
| D3YYI7 | E3 ubiquitin-protein ligase RNF217 OS=Mus musculus OX=10090 GN=Rnf217 PE=1 SV=2 | 7.79E-17 | |
| TrEMBL | A0A2T7ESK9 | RING-type domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_2G265600 PE=3 SV=1 | 1.85E-191 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH03.2028, BH03.2377, CH03.2352, CH03.2353 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0481110.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_005352, gene-QYE76_005438, gene-QYE76_015362 |
| Poaceae | Oryza coarctata | 2 | Oco17G005570, Oco18G005680 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g26470.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G192700 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G009320, Chr10G009330 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G354700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG034770, gene_TRIDC5BG036480 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G215600.1, TraesCS5B02G214100.1 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-19790 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32591 |