Basic Information
Locus ID:
CH03.2274
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
In Between Ring fingers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 34757720 | 34763804 | + | CH03.2274 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.69 | 102,122.01 Da | 59.67 | 62.48 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 719 | 752 | 1.1E-4 | IPR018957 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 409 | 445 | 1.2E-4 | IPR018957 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 802 | 849 | 3.6E-9 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 492 | 539 | 4.8E-9 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 799 | 854 | 1.13E-6 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 859 | 922 | 4.94E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 550 | 587 | 3.53E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 405 | 487 | 9.89E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 489 | 544 | 4.94E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 714 | 797 | 8.99E-16 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 537 | 595 | 3.7E-8 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 847 | 923 | 1.7E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 713 | 800 | 1.7E-21 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 403 | 489 | 1.3E-21 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 478 | 539 | 5.2E-13 | IPR002867 |
| SMART | SM00184 | ring_2 | 879 | 921 | 3.9 | IPR001841 |
| SMART | SM00184 | ring_2 | 719 | 766 | 0.045 | IPR001841 |
| SMART | SM00184 | ring_2 | 409 | 456 | 0.045 | IPR001841 |
| SMART | SM00647 | ibrneu5 | 859 | 921 | 0.24 | IPR002867 |
| SMART | SM00184 | ring_2 | 496 | 572 | 16.0 | IPR001841 |
| SMART | SM00647 | ibrneu5 | 788 | 849 | 3.9E-13 | IPR002867 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 719 | 764 | 10.438611 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 405 | 621 | 22.308174 | IPR044066 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 715 | 923 | 27.738028 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 409 | 454 | 10.438611 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 737 | 746 | - | IPR017907 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 427 | 436 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 665 | 709 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 362 | 399 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 665 | 683 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 195 | 244 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 684 | 708 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 362 | 386 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G53690.1 | RING/U-box superfamily protein. | 3.76E-72 |
| RefSeq | XP_039834556.1 | probable E3 ubiquitin-protein ligase RNF144A-B [Panicum virgatum] | 5.81E-202 |
| P50876 | E3 ubiquitin-protein ligase RNF144A OS=Homo sapiens OX=9606 GN=RNF144A PE=1 SV=2 | 1.15E-19 | |
| TrEMBL | A0A1E5W141 | E3 ubiquitin-protein ligase RNF144A OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0007875 PE=3 SV=1 | 1.97E-229 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology