Basic Information
Locus ID:
CH03.2273
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
IBR domain, a half RING-finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 34748968 | 34752452 | + | CH03.2273 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 108,084.90 Da | 58.07 | 68.23 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 834 | 883 | 8.3E-9 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 608 | 657 | 4.1E-9 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 382 | 431 | 1.4E-9 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 609 | 662 | 5.65E-6 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 293 | 376 | 1.77E-13 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 747 | 828 | 6.36E-15 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 834 | 888 | 4.59E-5 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 894 | 929 | 9.18E-5 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 381 | 436 | 6.36E-6 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 519 | 602 | 6.71E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 744 | 832 | 7.0E-22 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 517 | 605 | 1.0E-22 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 291 | 378 | 2.1E-21 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 367 | 431 | 5.6E-13 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 819 | 883 | 9.4E-10 | IPR002867 |
| SMART | SM00184 | ring_2 | 298 | 345 | 0.48 | IPR001841 |
| SMART | SM00184 | ring_2 | 750 | 797 | 0.22 | IPR001841 |
| SMART | SM00647 | ibrneu5 | 593 | 657 | 2.0E-8 | IPR002867 |
| SMART | SM00184 | ring_2 | 524 | 571 | 0.12 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 746 | 964 | 20.175474 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 750 | 795 | 10.04028 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 298 | 343 | 9.538678 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 294 | 572 | 16.55415 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 524 | 569 | 9.686208 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 316 | 325 | - | IPR017907 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 768 | 777 | - | IPR017907 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 542 | 551 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 41 | - | - |
| Coils | Coil | Coil | 660 | 680 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G53690.1 | RING/U-box superfamily protein. | 2.5E-58 |
| RefSeq | XP_004956836.1 | uncharacterized protein LOC101753869 [Setaria italica] | 0 |
| Q6DH94 | Probable E3 ubiquitin-protein ligase RNF144A-B OS=Danio rerio OX=7955 GN=rnf144ab PE=2 SV=1 | 4.13E-19 | |
| TrEMBL | K3ZQS9 | RBR-type E3 ubiquitin transferase OS=Setaria italica OX=4555 GN=101753869 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology