Basic Information
Locus ID:
CH03.2263
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
CAF1 family ribonuclease
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 34552341 | 34553683 | + | CH03.2263 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.63 | 47,255.75 Da | 47.40 | 72.09 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04857 | CAF1 family ribonuclease | 173 | 289 | 8.9E-6 | IPR006941 |
| Pfam | PF04857 | CAF1 family ribonuclease | 317 | 383 | 4.9E-6 | IPR006941 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 170 | 424 | 2.73E-86 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 157 | 427 | 1.9E-94 | IPR036397 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 73 | 90 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 109 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32070.1 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein. | 2.51E-140 |
| RefSeq | XP_004956826.1 | probable CCR4-associated factor 1 homolog 7 [Setaria italica] | 2.52E-197 |
| Q9SKZ2 | Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2 | 2.41E-139 | |
| TrEMBL | A0A0Q3R318 | poly(A)-specific ribonuclease OS=Setaria italica OX=4555 PE=3 SV=1 | 1.43E-203 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology