Basic Information
Locus ID:
CH03.2219
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 34049552 | 34054817 | + | CH03.2219 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.50 | 52,737.78 Da | 51.72 | 78.85 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 95 | 168 | 1.16047E-30 | - |
| Pfam | PF09280 | XPC-binding domain | 351 | 406 | 2.7E-20 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 254 | 289 | 1.0E-12 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 433 | 469 | 5.5E-10 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 98 | 170 | 1.4E-17 | IPR000626 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 347 | 412 | 7.59E-20 | IPR036353 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 95 | 182 | 9.91E-22 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 413 | 477 | 2.34E-13 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 247 | 295 | 1.34E-10 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 244 | 294 | 8.4E-21 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 341 | 406 | 1.4E-23 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 425 | 473 | 9.1E-21 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 93 | 173 | 5.0E-25 | - |
| SMART | SM00727 | CBM | 349 | 392 | 5.1E-7 | IPR006636 |
| SMART | SM00213 | ubq_7 | 95 | 169 | 3.9E-19 | IPR000626 |
| SMART | SM00165 | uba_6 | 434 | 471 | 2.5E-8 | IPR015940 |
| SMART | SM00165 | uba_6 | 251 | 291 | 2.3E-4 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 95 | 477 | 1.5E-110 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 432 | 472 | 13.751749 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 249 | 292 | 12.113146 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 95 | 173 | 20.370096 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 377 | 399 | 1.3E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 460 | 475 | 1.3E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 445 | 459 | 1.3E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 428 | 444 | 1.3E-31 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 311 | 325 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 176 | 211 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 176 | 208 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 301 | 325 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 5.33E-136 |
| RefSeq | XP_004956778.1 | probable ubiquitin receptor RAD23 [Setaria italica] | 1.61E-216 |
| Q40742 | Probable ubiquitin receptor RAD23 OS=Oryza sativa subsp. japonica OX=39947 GN=RAD23 PE=1 SV=2 | 7.59E-166 | |
| TrEMBL | A0A4U6W6D2 | Ubiquitin receptor RAD23 OS=Setaria viridis OX=4556 GN=SEVIR_2G209200v2 PE=3 SV=1 | 3.65E-215 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology