halophFGD

Basic Information

Locus ID: CH03.2109

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Short Name: SMG1

Description: Belongs to the PI3 PI4-kinase family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
CH03	32701095	32705183	+	CH03.2109

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.04	81,538.11 Da	40.24	99.96	-0.06

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd01650	RT_nLTR_like	77	289	1.05767E-42	-
Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	74	288	6.1E-28	IPR000477
Pfam	PF13966	zinc-binding in reverse transcriptase	534	618	1.6E-27	IPR026960
SUPERFAMILY	SSF56672	DNA/RNA polymerases	91	260	4.67E-15	IPR043502
ProSiteProfiles	PS50878	Reverse transcriptase (RT) catalytic domain profile.	1	289	14.615337	IPR000477

KEGG Pathway

KO Term:

K08873 (serine/threonine-protein kinase SMG1 [EC:2.7.11.1])

Pathway:

ko03015 (mRNA surveillance pathway) map03015 (mRNA surveillance pathway)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_035822957.1	uncharacterized protein LOC100384063 isoform X1 [Zea mays]	1.58E-285
Swiss-Prot	O00370	LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1	9.37E-28
TrEMBL	A0A1D6PNE1	Protein kinase domain superfamily protein OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d048667 PE=4 SV=1	3.42E-298

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	1	gene_15553
Amaranthaceae	Chenopodium album	1	gene:ENSEOMG00000031727
Asteraceae	Flaveria trinervia	30	Ftri10G20412, Ftri10G33243, Ftri12G02514, Ftri12G08305 ... Ftri12G30924, Ftri13G08657, Ftri13G26094, Ftri13G30350, Ftri15G16888, Ftri15G24875, Ftri16G05122, Ftri16G24418, Ftri16G29669, Ftri16G30269, Ftri17G17651, Ftri17G30072, Ftri18G01709, Ftri18G05932, Ftri18G08795, Ftri18G11264, Ftri1G02664, Ftri3G11379, Ftri4G17008, Ftri4G32487, Ftri5G00239, Ftri5G00971, Ftri5G08115, Ftri8G05997, Ftri8G12221, Ftri9G24284
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno13g05290
Plantaginaceae	Plantago ovata	4	Pov_00007688, Pov_00012778, Pov_00020452, Pov_00028875
Plumbaginaceae	Limonium bicolor	1	Lb2G11920
Poaceae	Echinochloa crus-galli	22	AH01.4072, AH01.4286, AH01.5179, AH03.2975, AH04.816 ... AH05.2234, AH06.2570, AH08.2233, BH02.1198, BH02.222, BH04.1914, BH05.3851, BH05.807, BH07.501, BH07.91, BH09.3009, CH02.3876, CH03.2109, CH05.3703, CH05.823, CH07.905, CH09.1898
Poaceae	Eleusine coracana subsp. coracana	3	gene-QOZ80_4AG0310820, gene-QOZ80_5AG0395840 ... gene-QOZ80_6AG0527250
Poaceae	Hordeum vulgare	53	HORVU.MOREX.r3.1HG0031030.1.CDS1 ... HORVU.MOREX.r3.1HG0031680.1.CDS1, HORVU.MOREX.r3.1HG0035170.1.CDS1, HORVU.MOREX.r3.1HG0045570.1.CDS1, HORVU.MOREX.r3.1HG0047260.1.CDS1, HORVU.MOREX.r3.1HG0064370.1.CDS1, HORVU.MOREX.r3.1HG0088420.1.CDS1, HORVU.MOREX.r3.2HG0103040.1.CDS1, HORVU.MOREX.r3.2HG0106070.1.CDS1, HORVU.MOREX.r3.2HG0106080.1.CDS1, HORVU.MOREX.r3.2HG0110340.1.CDS1, HORVU.MOREX.r3.2HG0155900.1.CDS1, HORVU.MOREX.r3.2HG0155970.1.CDS1, HORVU.MOREX.r3.2HG0156400.1, HORVU.MOREX.r3.2HG0156470.1.CDS1, HORVU.MOREX.r3.2HG0194100.1.CDS1, HORVU.MOREX.r3.3HG0232100.1.CDS1, HORVU.MOREX.r3.3HG0241680.1.CDS1, HORVU.MOREX.r3.3HG0241940.1.CDS1, HORVU.MOREX.r3.3HG0259430.1.CDS1, HORVU.MOREX.r3.3HG0263750.1.CDS1, HORVU.MOREX.r3.3HG0263780.1.CDS1, HORVU.MOREX.r3.3HG0263830.1.CDS1, HORVU.MOREX.r3.3HG0275930.1, HORVU.MOREX.r3.3HG0278880.1.CDS1, HORVU.MOREX.r3.3HG0283150.1.CDS1, HORVU.MOREX.r3.4HG0366810.1.CDS1, HORVU.MOREX.r3.4HG0367520.1.CDS1, HORVU.MOREX.r3.4HG0376060.1.CDS1, HORVU.MOREX.r3.4HG0414720.1, HORVU.MOREX.r3.5HG0428150.1, HORVU.MOREX.r3.5HG0454990.1.CDS1, HORVU.MOREX.r3.5HG0456730.1.CDS1, HORVU.MOREX.r3.5HG0467830.1.CDS1, HORVU.MOREX.r3.5HG0473550.1.CDS1, HORVU.MOREX.r3.5HG0484380.1.CDS1, HORVU.MOREX.r3.6HG0566050.1.CDS1, HORVU.MOREX.r3.6HG0576160.1.CDS1, HORVU.MOREX.r3.6HG0578200.1.CDS1, HORVU.MOREX.r3.6HG0594200.1.CDS1, HORVU.MOREX.r3.6HG0597520.1.CDS1, HORVU.MOREX.r3.6HG0602820.1.CDS1, HORVU.MOREX.r3.6HG0607670.1.CDS1, HORVU.MOREX.r3.6HG0609410.1.CDS1, HORVU.MOREX.r3.6HG0623590.1.CDS1, HORVU.MOREX.r3.6HG0632190.1.CDS1, HORVU.MOREX.r3.7HG0643870.1.CDS1, HORVU.MOREX.r3.7HG0650590.1.CDS1, HORVU.MOREX.r3.7HG0676730.1.CDS1, HORVU.MOREX.r3.7HG0722160.1.CDS1, HORVU.MOREX.r3.7HG0729580.1.CDS1, HORVU.MOREX.r3.7HG0734700.1.CDS1, HORVU.MOREX.r3.7HG0751400.1.CDS1
Poaceae	Lolium multiflorum	62	gene-QYE76_001722, gene-QYE76_003634, gene-QYE76_005818 ... gene-QYE76_007277, gene-QYE76_008012, gene-QYE76_008121, gene-QYE76_008268, gene-QYE76_008635, gene-QYE76_008664, gene-QYE76_008940, gene-QYE76_009843, gene-QYE76_010872, gene-QYE76_011430, gene-QYE76_011576, gene-QYE76_012103, gene-QYE76_015395, gene-QYE76_015685, gene-QYE76_017211, gene-QYE76_017324, gene-QYE76_019405, gene-QYE76_019940, gene-QYE76_020199, gene-QYE76_020596, gene-QYE76_023545, gene-QYE76_026296, gene-QYE76_026894, gene-QYE76_030234, gene-QYE76_030654, gene-QYE76_031089, gene-QYE76_032842, gene-QYE76_033286, gene-QYE76_034077, gene-QYE76_034103, gene-QYE76_034265, gene-QYE76_037342, gene-QYE76_038659, gene-QYE76_039933, gene-QYE76_039981, gene-QYE76_041575, gene-QYE76_043113, gene-QYE76_043552, gene-QYE76_045719, gene-QYE76_048296, gene-QYE76_049069, gene-QYE76_050150, gene-QYE76_052515, gene-QYE76_056797, gene-QYE76_057097, gene-QYE76_058423, gene-QYE76_059867, gene-QYE76_060106, gene-QYE76_060703, gene-QYE76_060830, gene-QYE76_061071, gene-QYE76_062946, gene-QYE76_064118, gene-QYE76_064951, gene-QYE76_067068, gene-QYE76_067255, gene-QYE76_067870, gene-QYE76_070148, gene-QYE76_070731
Poaceae	Oryza coarctata	10	Oco01G001980, Oco02G030260, Oco10G006380, Oco10G007770 ... Oco13G008770, Oco14G014750, Oco17G008150, Oco18G003250, Oco21G008340, Oco24G003360
Poaceae	Oryza sativa	5	LOC_Os04g20550.1, LOC_Os08g06590.1, LOC_Os08g41054.1 ... LOC_Os09g23390.1, LOC_Os11g35820.1
Poaceae	Paspalum vaginatum	25	gene-BS78_01G114100, gene-BS78_01G123700, gene-BS78_K077700 ... gene-BS78_01G177100, gene-BS78_03G040700, gene-BS78_03G135900, gene-BS78_03G355400, gene-BS78_04G300500, gene-BS78_05G167800, gene-BS78_05G202800, gene-BS78_05G233700, gene-BS78_05G288800, gene-BS78_06G021200, gene-BS78_07G130200, gene-BS78_07G191800, gene-BS78_07G205700, gene-BS78_08G042700, gene-BS78_08G092700, gene-BS78_08G173700, gene-BS78_09G086300, gene-BS78_09G118100, gene-BS78_09G153900, gene-BS78_10G005700, gene-BS78_10G083400, gene-BS78_K320300
Poaceae	Puccinellia tenuiflora	28	Pt_Chr0100114, Pt_Chr0100224, Pt_Chr0100927, Pt_Chr0105232 ... Pt_Chr0201718, Pt_Chr0205344, Pt_Chr0205380, Pt_Chr0205839, Pt_Chr0207007, Pt_Chr0303070, Pt_Chr0303096, Pt_Chr0303097, Pt_Chr0307264, Pt_Chr0404160, Pt_Chr0500401, Pt_Chr0501499, Pt_Chr0502476, Pt_Chr0502762, Pt_Chr0504972, Pt_Chr0600790, Pt_Chr0603223, Pt_Chr0603445, Pt_Chr0605906, Pt_Chr0700859, Pt_Chr0703273, Pt_Chr0705252, Pt_Ctg00097, Pt_Ctg00368
Poaceae	Sporobolus alterniflorus	44	Chr01G006180, Chr01G010730, Chr02G012690, Chr02G022710 ... Chr02G023000, Chr03G010260, Chr05G011930, Chr05G023440, Chr05G030270, Chr06G006530, Chr07G012350, Chr08G009620, Chr08G015070, Chr09G017030, Chr0G002360, Chr0G005970, Chr10G013850, Chr12G007580, Chr12G010110, Chr13G014360, Chr13G016220, Chr15G008100, Chr15G008260, Chr15G010570, Chr15G011190, Chr16G011910, Chr16G012590, Chr16G015260, Chr17G005530, Chr17G010880, Chr18G002120, Chr19G003700, Chr19G014860, Chr22G004730, Chr22G005900, Chr22G014390, Chr23G006020, Chr25G006230, Chr25G012290, Chr25G014890, Chr27G000110, Chr27G000910, Chr28G008380, Chr30G006730
Poaceae	Triticum dicoccoides	5	gene_TRIDC1AG036730, gene_TRIDC3AG022030 ... gene_TRIDC3BG033630, gene_TRIDC7AG027550, gene_TRIDC7BG018330
Poaceae	Triticum aestivum	1	TraesCS2A02G239400.1
Poaceae	Zea mays	2	Zm00001eb279530_P001, Zm00001eb431450_P001
Poaceae	Zoysia japonica	14	nbis-gene-11598, nbis-gene-19612, nbis-gene-19782 ... nbis-gene-24625, nbis-gene-29145, nbis-gene-34469, nbis-gene-37022, nbis-gene-39964, nbis-gene-43689, nbis-gene-45472, nbis-gene-54430, nbis-gene-54555, nbis-gene-55161, nbis-gene-9007
Poaceae	Zoysia macrostachya	2	Zma_g17653, Zma_g24925