Basic Information
Locus ID:
CH03.2038
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ring finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 31776316 | 31776975 | + | CH03.2038 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.69 | 23,356.74 Da | 45.82 | 78.95 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 28 | 71 | 5.4E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 28 | 76 | 4.5E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 21 | 86 | 9.9E-8 | IPR013083 |
| SMART | SM00184 | ring_2 | 29 | 69 | 0.0097 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 29 | 70 | 9.74522 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_002460123.2 | uncharacterized protein LOC8055585 [Sorghum bicolor] | 1.13E-32 |
| TrEMBL | A0A835EF15 | RING-type domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_042155 PE=4 SV=1 | 1.67E-43 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1248s00003.v1.0 |
| Poaceae | Echinochloa crus-galli | 8 | AH03.1700, AH03.3767, BH01.2823, BH03.4047, CH03.2036 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0578090, gene-QOZ80_7BG0609390 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0122090.1.CDS1 |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_002817, gene-QYE76_039548, gene-QYE76_039634 ... |
| Poaceae | Oryza coarctata | 7 | Oco02G013000, Oco02G013010, Oco02G013020, Oco06G011720 ... |
| Poaceae | Oryza sativa | 9 | LOC_Os01g38690.1, LOC_Os01g38700.1, LOC_Os01g38710.1 ... |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G164300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0604504 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr10G011450, Chr11G010870, Chr27G015410, Chr27G015420 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G309500 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G156000.1.cds1, TraesCS2B02G181500.1.cds1 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-17826 |