Basic Information
Locus ID:
CH03.202
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 2890469 | 2891662 | + | CH03.202 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.37 | 44,801.46 Da | 43.19 | 85.52 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 8 | 49 | 8.2E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 8 | 63 | 3.14E-13 | IPR036047 |
| SUPERFAMILY | SSF50969 | YVTN repeat-like/Quinoprotein amine dehydrogenase | 104 | 373 | 1.65E-5 | IPR011044 |
| Gene3D | G3DSA:1.20.1280.50 | - | 4 | 44 | 4.2E-6 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_025819368.1 | uncharacterized protein LOC112895608 [Panicum hallii] | 5.98E-100 |
| TrEMBL | A0A8T0SIM9 | F-box domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_5KG206700 PE=4 SV=1 | 9.58E-118 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH03.132, CH03.202 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G201700 |