Basic Information
Locus ID:
CH03.1998
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ribosomal_L40e
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 31405067 | 31405892 | + | CH03.1998 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.98 | 13,921.70 Da | 76.10 | 68.42 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 72 | 112 | 2.5E-15 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 70 | 116 | 5.76E-16 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 68 | 125 | 2.6E-19 | - |
| SMART | SM00213 | ubq_7 | 33 | 111 | 4.6E-4 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 74 | 115 | 16.363422 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 71 | 91 | 1.9E-15 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 92 | 113 | 1.9E-15 | IPR019956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 44 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G23410.1 | Ribosomal protein S27a / Ubiquitin family protein. | 2.64E-16 |
| RefSeq | XP_043621398.1 | ubiquitin-like [Erigeron canadensis] | 7.03E-19 |
| P69061 | Ubiquitin-ribosomal protein eS31 fusion protein OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=ubi3 PE=1 SV=2 | 8.05E-16 | |
| TrEMBL | A0A3L6TA52 | Ubiquitin-like OS=Panicum miliaceum OX=4540 GN=C2845_PM03G32490 PE=3 SV=1 | 6.34E-17 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for CH03.1998.