Basic Information
Locus ID:
CH03.1956
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Lectin-domain containing receptor kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 30634412 | 30638777 | - | CH03.1956 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.69 | 105,043.71 Da | 49.91 | 91.35 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 316 | 583 | 1.4E-49 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 293 | 586 | 2.02E-73 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 300 | 394 | 3.2E-29 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 395 | 594 | 1.0E-55 | - |
| SMART | SM00220 | serkin_6 | 315 | 586 | 6.0E-30 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 315 | 596 | 37.078442 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 438 | 450 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 739 | 758 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 677 | 696 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10530.1 | Concanavalin A-like lectin protein kinase family protein. | 1.26E-80 |
| RefSeq | XP_039813986.1 | probable kinase CHARK [Panicum virgatum] | 2.91E-185 |
| Q2QRN7 | Probable kinase CHARK OS=Oryza sativa subsp. japonica OX=39947 GN=CHARK PE=2 SV=1 | 9.53E-112 | |
| TrEMBL | A0A835G030 | Protein kinase domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_000611 PE=4 SV=1 | 2.99E-228 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | CH03.1956 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_6BG0486290 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0195180.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_004657 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G156700 |
| Poaceae | Triticum aestivum | 4 | TraesCS2B02G485000.1, TraesCS2D02G464000.1 ... |