Basic Information
Locus ID:
CH03.1953
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 30562233 | 30565854 | - | CH03.1953 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.45 | 64,918.31 Da | 63.35 | 77.13 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 292 | 561 | 1.8593E-99 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 291 | 490 | 1.8E-42 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 271 | 560 | 6.66E-76 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 271 | 362 | 9.3E-33 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 363 | 575 | 1.9E-56 | - |
| SMART | SM00220 | serkin_6 | 286 | 552 | 1.9E-30 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 286 | 565 | 35.580238 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 292 | 314 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 407 | 419 | - | IPR008271 |
| PRINTS | PR01217 | Proline rich extensin signature | 87 | 103 | 2.6E-12 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 205 | 230 | 2.6E-12 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 66 | 87 | 2.6E-12 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 48 | 60 | 2.6E-12 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 15 | 31 | 2.6E-12 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 209 | 260 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 209 | 223 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 224 | 254 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 160 | 197 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 177 | 196 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 52 | 107 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G49270.1 | Protein kinase superfamily protein. | 8.76E-120 |
| RefSeq | XP_008652581.1 | proline-rich receptor-like protein kinase PERK7 [Zea mays] | 4.06E-175 |
| Q9XI96 | Proline-rich receptor-like protein kinase PERK7 OS=Arabidopsis thaliana OX=3702 GN=PERK7 PE=2 SV=1 | 8.48E-119 | |
| TrEMBL | A0A804QAM8 | Protein kinase domain-containing protein OS=Zea mays OX=4577 PE=4 SV=1 | 9.17E-174 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH03.1636, BH03.1789, CH03.1953 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_02G157200, gene-BS78_02G157300 ... |