Basic Information
Locus ID:
CH03.1944
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
BTB/POZ domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 30406530 | 30407576 | - | CH03.1944 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 35,171.12 Da | 49.27 | 85.05 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00651 | BTB/POZ domain | 177 | 218 | 6.8E-5 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 177 | 216 | 9.94E-7 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 173 | 251 | 3.9E-6 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 252 | 319 | 8.4E-8 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_002462249.2 | BTB/POZ and MATH domain-containing protein 1 [Sorghum bicolor] | 2.26E-63 |
| TrEMBL | A0A2S3GZA9 | BTB domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_2G233500 PE=4 SV=1 | 7.61E-142 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH03.1627, CH03.1944 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_6AG0532640, gene-QOZ80_6BG0486160 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0474200.1.CDS1 |
| Poaceae | Lolium multiflorum | 7 | gene-QYE76_004664, gene-QYE76_004665, gene-QYE76_004666 ... |
| Poaceae | Oryza coarctata | 2 | Oco17G002920, Oco17G002940 |
| Poaceae | Oryza sativa | 2 | LOC_Os09g16850.1, LOC_Os09g16870.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G194800 |
| Poaceae | Puccinellia tenuiflora | 6 | Pt_Chr0203193, Pt_Chr0500236, Pt_Chr0702590, Pt_Chr0702591 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G314700 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC5AG030150 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G186100.1.cds1, TraesCS5B02G184200.1.cds1 ... |