Basic Information
Locus ID:
CH03.1930
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
NB-ARC domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 30139957 | 30152866 | + | CH03.1930 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 186,659.98 Da | 45.50 | 102.29 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 1307 | 1504 | 1.7E-23 | IPR001245 |
| Pfam | PF18052 | Rx N-terminal domain | 8 | 85 | 5.3E-8 | IPR041118 |
| Pfam | PF00931 | NB-ARC domain | 160 | 381 | 5.9E-33 | IPR002182 |
| Pfam | PF13855 | Leucine rich repeat | 553 | 609 | 9.2E-8 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 497 | 887 | 4.08E-59 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 808 | 1137 | 7.65E-12 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1287 | 1567 | 2.74E-46 | IPR011009 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 150 | 424 | 1.09E-47 | IPR027417 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 518 | 800 | 1.7E-56 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 920 | 1212 | 1.7E-6 | IPR032675 |
| Gene3D | G3DSA:1.20.5.4130 | - | 7 | 103 | 1.3E-5 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1267 | 1376 | 2.5E-18 | - |
| Gene3D | G3DSA:1.10.10.10 | - | 408 | 508 | 1.5E-5 | IPR036388 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1377 | 1590 | 3.3E-35 | - |
| Gene3D | G3DSA:1.10.8.430 | - | 323 | 407 | 4.2E-7 | IPR042197 |
| Gene3D | G3DSA:3.40.50.300 | - | 144 | 315 | 7.1E-27 | IPR027417 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 802 | 904 | 1.5E-10 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 619 | 642 | 19.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 690 | 713 | 370.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 596 | 618 | 60.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 573 | 595 | 51.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1302 | 1541 | 24.032759 | IPR000719 |
| PRINTS | PR00364 | Disease resistance protein signature | 263 | 277 | 4.9E-13 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 180 | 195 | 4.9E-13 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 688 | 704 | 4.9E-13 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 359 | 373 | 4.9E-13 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1210 | 1231 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G11520.1 | calmodulin-binding receptor-like cytoplasmic kinase 3. high overall homology to CRCK1 | 1.12E-62 |
| RefSeq | XP_004956600.1 | disease resistance protein TAO1 isoform X1 [Setaria italica] | 0 |
| Q9ASQ5 | Calmodulin-binding receptor-like cytoplasmic kinase 3 OS=Arabidopsis thaliana OX=3702 GN=CRCK3 PE=2 SV=1 | 1.09E-61 | |
| TrEMBL | A0A368Q2A0 | Protein kinase domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_2G178600v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | BH03.1775, CH03.1930 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_6BG0485990 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0473950.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_004556, gene-QYE76_017737 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g15850.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_K051400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0702607, Pt_Chr0702633 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G312800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG030020, gene_TRIDC5BG031660 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G184900.1, TraesCS5B02G182900.3 ... |
| Poaceae | Zea mays | 1 | Zm00001eb310060_P001 |