Basic Information
Locus ID:
CH03.1862
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 28769176 | 28775061 | - | CH03.1862 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.09 | 101,064.13 Da | 47.37 | 76.35 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 732 | 826 | 2.57949E-13 | - |
| SUPERFAMILY | SSF50630 | Acid proteases | 730 | 831 | 2.44E-9 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 713 | 846 | 1.3E-17 | IPR021109 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 328 | 371 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 445 | 473 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 617 | 631 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 328 | 393 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 412 | 484 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 615 | 653 | - | - |
| Coils | Coil | Coil | 575 | 595 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039776984.1 | uncharacterized protein LOC120644422 isoform X2 [Panicum virgatum] | 1.08E-132 |
| TrEMBL | A0A3L6QFY6 | Reverse transcriptase OS=Panicum miliaceum OX=4540 GN=C2845_PM12G13800 PE=4 SV=1 | 6.32E-138 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 30 | AH02.2831, AH03.661, AH04.1103, AH04.216, AH04.458, BH01.627 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_053643, gene-QYE76_056610 |