Basic Information
Locus ID:
CH03.1812
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 26915224 | 26922532 | - | CH03.1812 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.52 | 81,922.37 Da | 45.85 | 84.49 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 281 | 417 | 3.22085E-71 | - |
| CDD | cd18015 | DEXHc_RecQ1 | 72 | 280 | 1.54443E-128 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 305 | 407 | 5.2E-16 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 93 | 260 | 1.1E-17 | IPR011545 |
| Pfam | PF16124 | RecQ zinc-binding | 420 | 476 | 1.3E-9 | IPR032284 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 129 | 424 | 9.0E-57 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 480 | 586 | 2.7E-23 | IPR036388 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 606 | 681 | 1.6E-10 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 281 | 478 | 3.5E-63 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 45 | 280 | 3.1E-89 | IPR027417 |
| SMART | SM00487 | ultradead3 | 86 | 289 | 2.0E-27 | IPR014001 |
| SMART | SM00490 | helicmild6 | 327 | 408 | 9.2E-27 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 83 | 497 | 3.2E-158 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 298 | 447 | 20.154026 | IPR001650 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 604 | 687 | 10.479325 | IPR002121 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 98 | 273 | 22.398556 | IPR014001 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 688 | 722 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 681 | 728 | - | - |
| Coils | Coil | Coil | 600 | 627 | - | - |
| Coils | Coil | Coil | 18 | 38 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.1 | RECQ helicase L2. Encodes a (d)NTP-dependent 3'->5' DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro. | 4.9199999986563E-315 |
| RefSeq | XP_039823035.1 | ATP-dependent DNA helicase Q-like 2 isoform X3 [Panicum virgatum] | 0 |
| Q9FT73 | ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana OX=3702 GN=RECQL2 PE=1 SV=1 | 4.7199999999481E-314 | |
| TrEMBL | A0A8T0PBG7 | ATP-dependent DNA helicase OS=Panicum virgatum OX=38727 GN=PVAP13_8NG299200 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology