halophFGD

Basic Information

Locus ID: CH03.168

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Short Name: STS

Description: Raffinose synthase or seed imbibition protein Sip1

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
CH03	2407654	2413189	-	CH03.168

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.51	85,909.96 Da	50.79	78.84	-0.18

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF05691	Raffinose synthase or seed imbibition protein Sip1	627	725	3.1E-37	IPR008811
SUPERFAMILY	SSF81383	F-box domain	35	97	1.37E-9	IPR036047
SUPERFAMILY	SSF50969	YVTN repeat-like/Quinoprotein amine dehydrogenase	160	412	3.77E-5	IPR011044
MobiDBLite	mobidb-lite	consensus disorder prediction	471	500	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	37	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K06611 (stachyose synthetase [EC:2.4.1.67])

Pathway:

ko00052 (Galactose metabolism) map00052 (Galactose metabolism)

Reaction:

R03418 (alpha-D-Galactosyl-(1->3)-1D-myo-inositol + Raffinose <=> myo-Inositol + Stachyose)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT4G01970.1	stachyose synthase. Encodes a putative stachyose synthetase.	4.06E-41
RefSeq	XP_039845965.1	uncharacterized protein LOC120705599 [Panicum virgatum]	1.53E-195
Swiss-Prot	Q93XK2	Stachyose synthase OS=Pisum sativum OX=3888 GN=STS1 PE=1 SV=1	5.3E-48
TrEMBL	A0A8T0S9H5	F-box domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_5KG024100 PE=4 SV=1	3.46E-194

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	45	AH01.1625, AH01.3685, AH03.133, AH03.156, AH03.157, AH03.90 ... AH08.1672, BH01.1077, BH01.1821, BH01.4038, BH03.116, BH03.118, BH03.155, BH03.157, BH03.159, BH03.192, BH03.197, BH03.594, BH04.1798, BH05.3426, BH06.1669, BH07.521, BH08.1721, BH09.2369, CH01.4306, CH03.1128, CH03.167, CH03.168, CH03.215, CH03.218, CH03.220, CH03.221, CH03.246, CH03.247, CH03.252, CH03.569, CH03.672, CH03.673, CH03.720, CH05.3865, CH06.1430, CH07.1197, CH07.1465, CH09.2515, Contig2334.2
Poaceae	Eleusine coracana subsp. coracana	71	gene-QOZ80_3AG0244410, gene-QOZ80_3AG0247760 ... gene-QOZ80_3AG0248790, gene-QOZ80_3BG0283750, gene-QOZ80_5AG0374940, gene-QOZ80_5AG0406490, gene-QOZ80_5AG0406520, gene-QOZ80_5BG0421280, gene-QOZ80_5BG0454460, gene-QOZ80_5BG0454510, gene-QOZ80_5BG0454540, gene-QOZ80_6AG0536340, gene-QOZ80_6BG0489620, gene-QOZ80_7AG0553100, gene-QOZ80_7AG0553110, gene-QOZ80_7AG0553510, gene-QOZ80_7AG0553540, gene-QOZ80_7AG0553550, gene-QOZ80_7AG0553620, gene-QOZ80_7AG0553640, gene-QOZ80_7AG0553670, gene-QOZ80_7AG0553700, gene-QOZ80_7AG0553740, gene-QOZ80_7AG0553750, gene-QOZ80_7AG0554000, gene-QOZ80_7AG0554010, gene-QOZ80_7AG0554030, gene-QOZ80_7AG0554060, gene-QOZ80_7AG0554110, gene-QOZ80_7AG0554120, gene-QOZ80_7AG0554130, gene-QOZ80_7AG0554150, gene-QOZ80_7AG0554280, gene-QOZ80_7AG0554300, gene-QOZ80_7AG0554310, gene-QOZ80_7AG0554400, gene-QOZ80_7AG0554410, gene-QOZ80_7AG0554420, gene-QOZ80_7AG0554430, gene-QOZ80_7AG0554440, gene-QOZ80_7AG0554450, gene-QOZ80_7AG0559250, gene-QOZ80_7AG0559260, gene-QOZ80_7BG0584150, gene-QOZ80_7BG0584550, gene-QOZ80_7BG0584630, gene-QOZ80_7BG0584640, gene-QOZ80_7BG0584690, gene-QOZ80_7BG0584730, gene-QOZ80_7BG0584750, gene-QOZ80_7BG0584800, gene-QOZ80_7BG0584990, gene-QOZ80_7BG0585040, gene-QOZ80_7BG0585050, gene-QOZ80_7BG0585110, gene-QOZ80_7BG0585210, gene-QOZ80_7BG0585230, gene-QOZ80_7BG0585250, gene-QOZ80_7BG0585350, gene-QOZ80_7BG0585360, gene-QOZ80_7BG0585370, gene-QOZ80_7BG0585380, gene-QOZ80_7BG0585480, gene-QOZ80_7BG0585490, gene-QOZ80_7BG0585500, gene-QOZ80_7BG0585510, gene-QOZ80_7BG0585520, gene-QOZ80_7BG0590480, gene-QOZ80_7BG0590510, gene-QOZ80_8AG0632090, gene-QOZ80_8BG0661060
Poaceae	Hordeum vulgare	30	HORVU.MOREX.r3.1HG0072210.1, HORVU.MOREX.r3.1HG0072220.1 ... HORVU.MOREX.r3.1HG0072230.1, HORVU.MOREX.r3.1HG0072240.1, HORVU.MOREX.r3.1HG0072250.1, HORVU.MOREX.r3.2HG0155180.1, HORVU.MOREX.r3.2HG0155460.1, HORVU.MOREX.r3.2HG0179930.1, HORVU.MOREX.r3.3HG0225620.1.CDS1, HORVU.MOREX.r3.3HG0239960.1, HORVU.MOREX.r3.4HG0346930.1, HORVU.MOREX.r3.4HG0346940.1, HORVU.MOREX.r3.4HG0352700.1.CDS1, HORVU.MOREX.r3.4HG0390260.1.CDS1, HORVU.MOREX.r3.5HG0528340.1.CDS1, HORVU.MOREX.r3.5HG0529090.1.CDS1, HORVU.MOREX.r3.5HG0531240.1, HORVU.MOREX.r3.5HG0531640.1, HORVU.MOREX.r3.5HG0534380.1, HORVU.MOREX.r3.5HG0534390.1, HORVU.MOREX.r3.5HG0534440.1, HORVU.MOREX.r3.5HG0534450.1, HORVU.MOREX.r3.5HG0534490.1, HORVU.MOREX.r3.5HG0534570.1, HORVU.MOREX.r3.6HG0551680.1, HORVU.MOREX.r3.6HG0551690.1.CDS1, HORVU.MOREX.r3.6HG0616640.1, HORVU.MOREX.r3.6HG0616680.1.CDS1, HORVU.MOREX.r3.7HG0678860.1.CDS1, HORVU.MOREX.r3.7HG0750370.1.CDS1
Poaceae	Lolium multiflorum	55	gene-QYE76_001326, gene-QYE76_001384, gene-QYE76_001390 ... gene-QYE76_008239, gene-QYE76_014217, gene-QYE76_014295, gene-QYE76_019155, gene-QYE76_019650, gene-QYE76_019657, gene-QYE76_019812, gene-QYE76_020776, gene-QYE76_021030, gene-QYE76_034007, gene-QYE76_035132, gene-QYE76_036012, gene-QYE76_036023, gene-QYE76_039090, gene-QYE76_041209, gene-QYE76_041898, gene-QYE76_041908, gene-QYE76_041911, gene-QYE76_041918, gene-QYE76_041966, gene-QYE76_041974, gene-QYE76_041975, gene-QYE76_041980, gene-QYE76_041981, gene-QYE76_041982, gene-QYE76_044930, gene-QYE76_047695, gene-QYE76_056768, gene-QYE76_058873, gene-QYE76_059589, gene-QYE76_059849, gene-QYE76_059852, gene-QYE76_059889, gene-QYE76_059891, gene-QYE76_059892, gene-QYE76_059893, gene-QYE76_059984, gene-QYE76_059987, gene-QYE76_059989, gene-QYE76_060081, gene-QYE76_060082, gene-QYE76_060255, gene-QYE76_060284, gene-QYE76_060323, gene-QYE76_060328, gene-QYE76_060432, gene-QYE76_060480, gene-QYE76_060531, gene-QYE76_060532, gene-QYE76_060545, gene-QYE76_064733, gene-QYE76_065993
Poaceae	Oryza coarctata	13	Oco01G012580, Oco10G007090, Oco11G006530, Oco12G006640 ... Oco13G000780, Oco14G000750, Oco14G006330, Oco15G005880, Oco15G006140, Oco16G005630, Oco16G005640, Oco16G005680, Oco20G000810
Poaceae	Oryza sativa	17	LOC_Os01g37670.1, LOC_Os05g27550.1, LOC_Os06g13850.1 ... LOC_Os06g13960.1, LOC_Os06g13990.1, LOC_Os07g02890.1, LOC_Os07g02910.1, LOC_Os07g02930.1, LOC_Os07g03090.1, LOC_Os07g03100.1, LOC_Os07g03110.1, LOC_Os07g04750.1, LOC_Os07g23900.1, LOC_Os08g20440.2, LOC_Os08g20480.1, LOC_Os08g20492.1, LOC_Os11g37340.1
Poaceae	Paspalum vaginatum	43	gene-BS78_01G180800, gene-BS78_02G010400, gene-BS78_K036100 ... gene-BS78_02G010800, gene-BS78_02G011300, gene-BS78_02G014400, gene-BS78_02G015500, gene-BS78_02G016400, gene-BS78_02G018700, gene-BS78_02G018800, gene-BS78_02G018900, gene-BS78_02G019000, gene-BS78_02G019100, gene-BS78_02G019200, gene-BS78_02G019300, gene-BS78_02G019400, gene-BS78_02G019500, gene-BS78_02G019800, gene-BS78_02G022400, gene-BS78_02G022500, gene-BS78_02G022800, gene-BS78_02G023100, gene-BS78_02G023500, gene-BS78_02G024100, gene-BS78_02G024500, gene-BS78_02G065500, gene-BS78_02G069900, gene-BS78_02G099400, gene-BS78_02G191900, gene-BS78_03G100200, gene-BS78_03G300800, gene-BS78_04G011000, gene-BS78_04G307200, gene-BS78_05G027300, gene-BS78_05G027400, gene-BS78_06G006700, gene-BS78_06G022400, gene-BS78_07G147800, gene-BS78_08G026400, gene-BS78_09G099200, gene-BS78_09G128700, gene-BS78_10G139900, gene-BS78_K052000
Poaceae	Puccinellia tenuiflora	40	Pt_Chr0105578, Pt_Chr0105898, Pt_Chr0105909, Pt_Chr0105982 ... Pt_Chr0106204, Pt_Chr0106227, Pt_Chr0106409, Pt_Chr0106410, Pt_Chr0106529, Pt_Chr0106535, Pt_Chr0106539, Pt_Chr0106553, Pt_Chr0106555, Pt_Chr0106557, Pt_Chr0106563, Pt_Chr0106564, Pt_Chr0106565, Pt_Chr0106569, Pt_Chr0106570, Pt_Chr0106580, Pt_Chr0106596, Pt_Chr0106597, Pt_Chr0107961, Pt_Chr0108199, Pt_Chr0201020, Pt_Chr0201037, Pt_Chr0206717, Pt_Chr0207136, Pt_Chr0301941, Pt_Chr0302195, Pt_Chr0303389, Pt_Chr0303390, Pt_Chr0303392, Pt_Chr0303393, Pt_Chr0303432, Pt_Chr0303440, Pt_Chr0400829, Pt_Chr0400864, Pt_Chr0703366, Pt_Chr0704418
Poaceae	Sporobolus alterniflorus	23	Chr01G000530, Chr01G034330, Chr01G034980, Chr0G005110 ... Chr0G005200, Chr12G004630, Chr12G005280, Chr18G001880, Chr18G001890, Chr19G014540, Chr19G018180, Chr19G018190, Chr19G018370, Chr19G018450, Chr19G018460, Chr19G018470, Chr19G018560, Chr20G005230, Chr22G015870, Chr24G001990, Chr24G002130, Chr24G002280, Chr29G005150
Poaceae	Thinopyrum elongatum	32	Tel1E01G091000, Tel1E01G476200, Tel1E01G476300 ... Tel2E01G472800, Tel2E01G472900, Tel2E01G473200, Tel2E01G627800, Tel2E01G823400, Tel4E01G023800, Tel4E01G159500, Tel4E01G473700, Tel4E01G474500, Tel5E01G757600, Tel5E01G780200, Tel5E01G780400, Tel5E01G780600, Tel5E01G781200, Tel5E01G781300, Tel5E01G782300, Tel5E01G809000, Tel5E01G815800, Tel5E01G817200, Tel5E01G817700, Tel5E01G846400, Tel5E01G848500, Tel5E01G848800, Tel5E01G849100, Tel6E01G136300, Tel6E01G136600, Tel6E01G156700, Tel6E01G189300, Tel6E01G560500
Poaceae	Triticum dicoccoides	24	gene_TRIDC1AG038950, gene_TRIDC1BG015130 ... gene_TRIDC1BG044190, gene_TRIDC2AG037730, gene_TRIDC2AG037830, gene_TRIDC2BG040130, gene_TRIDC2BG040140, gene_TRIDC2BG040240, gene_TRIDC2BG055300, gene_TRIDC2BG074060, gene_TRIDC4AG034230, gene_TRIDC4AG034240, gene_TRIDC4BG015590, gene_TRIDC4BG050570, gene_TRIDC5BG076200, gene_TRIDC5BG077830, gene_TRIDC6AG001150, gene_TRIDC6AG006840, gene_TRIDC6AG010230, gene_TRIDC6AG010240, gene_TRIDC6AG047320, gene_TRIDC6BG011390, gene_TRIDC6BG015250, gene_TRIDC6BG015310
Poaceae	Triticum aestivum	119	TraesCS1A02G260600.1, TraesCS1A02G294400.1 ... TraesCS1A02G294500.1, TraesCS1A02G294600.1, TraesCS1B02G104800.1, TraesCS1B02G271200.1, TraesCS1B02G304000.1.cds1, TraesCS1D02G260600.1, TraesCS1D02G296900.1, TraesCS1D02G297000.1.cds1, TraesCS1D02G297100.1, TraesCS1D02G377600.1, TraesCS2A02G265400.1, TraesCS2A02G265600.1, TraesCS2A02G358800.1, TraesCS2B02G276400.1, TraesCS2B02G276500.1, TraesCS2B02G276600.1.cds1, TraesCS2B02G277100.1, TraesCS2B02G378200.2, TraesCS2B02G512800.1, TraesCS2D02G258100.1, TraesCS2D02G259000.1, TraesCS2D02G357700.1, TraesCS2D02G486000.1, TraesCS2D02G486100.1, TraesCS4A02G215700.1, TraesCS4A02G215800.1, TraesCS4A02G331500.1, TraesCS4A02G331700.1, TraesCS4A02G332300.1, TraesCS4A02G332500.1, TraesCS4A02G332700.1, TraesCS4A02G332800.1.cds1, TraesCS4A02G332900.1.cds1, TraesCS4A02G333000.1, TraesCS4A02G347900.1, TraesCS4A02G348200.1, TraesCS4A02G350800.1, TraesCS4A02G350900.1, TraesCS4A02G351000.1.cds1, TraesCS4A02G351100.1.cds1, TraesCS4A02G351200.1.cds1, TraesCS4A02G351300.1.cds1, TraesCS4A02G351400.1.cds1, TraesCS4A02G359700.1, TraesCS4A02G366500.1.cds1, TraesCS4B02G100400.1, TraesCS4B02G100500.1, TraesCS4B02G295400.1, TraesCS4D02G097000.1, TraesCS4D02G097100.1, TraesCS5A02G051300.1.cds1, TraesCS5A02G487500.1, TraesCS5B02G079700.1.cds1, TraesCS5B02G505500.2, TraesCS5B02G505600.1.cds1, TraesCS5B02G505900.1.cds1, TraesCS5B02G506200.1.cds1, TraesCS5B02G506400.1, TraesCS5B02G506700.1, TraesCS5B02G510300.1.cds1, TraesCS5B02G510400.1.cds1, TraesCS5B02G512700.1, TraesCS5B02G522100.1, TraesCS5B02G522200.1, TraesCS5B02G522300.1.cds1, TraesCS5B02G524800.1, TraesCS5B02G524900.1.cds1, TraesCS5B02G525000.1, TraesCS5B02G525100.1, TraesCS5B02G525200.1, TraesCS5B02G525400.1, TraesCS5B02G525700.1, TraesCS5B02G525800.1, TraesCS5B02G546100.1, TraesCS5B02G546800.1, TraesCS5B02G547100.1.cds1, TraesCS5B02G547300.1, TraesCS5B02G553200.1.cds1, TraesCS5B02G553300.1.cds1, TraesCS5B02G553500.1, TraesCS5B02G553700.1, TraesCS5D02G062300.1, TraesCS5D02G086300.1.cds1, TraesCS5D02G086600.1.cds1, TraesCS5D02G506500.1.cds1, TraesCS5D02G506600.1.cds1, TraesCS5D02G521000.1, TraesCS5D02G523800.1, TraesCS5D02G523900.1, TraesCS5D02G524200.1, TraesCS5D02G524300.1, TraesCS5D02G524400.1, TraesCS5D02G524900.1.cds1, TraesCS5D02G539600.2, TraesCS5D02G539700.1.cds1, TraesCS5D02G539900.1, TraesCS5D02G540100.1, TraesCS5D02G541000.1, TraesCS5D02G541200.1, TraesCS5D02G541300.2, TraesCS5D02G541700.1, TraesCS6A02G010500.1, TraesCS6A02G063500.1, TraesCS6A02G083500.1, TraesCS6A02G083600.1, TraesCS6A02G314800.1, TraesCS6B02G073700.1, TraesCS6B02G085000.1.cds1, TraesCS6B02G085100.1, TraesCS6B02G113400.1, TraesCS6B02G119700.1.cds1, TraesCS6D02G061200.1, TraesCS6D02G077200.1, TraesCS6D02G294100.1, TraesCS6D02G397600.1, TraesCS7B02G077900.1, TraesCSU02G142000.1
Poaceae	Zea mays	11	Zm00001eb028860_P002, Zm00001eb043870_P001 ... Zm00001eb043880_P001, Zm00001eb200220_P001, Zm00001eb229920_P001, Zm00001eb298860_P001, Zm00001eb299040_P004, Zm00001eb299080_P002, Zm00001eb299160_P001, Zm00001eb302490_P001, Zm00001eb332480_P001
Poaceae	Zoysia japonica	8	nbis-gene-26736, nbis-gene-32113, nbis-gene-35847 ... nbis-gene-50406, nbis-gene-50415, nbis-gene-50420, nbis-gene-50422, nbis-gene-50453
Poaceae	Zoysia macrostachya	7	Zma_g1468, Zma_g23046, Zma_g4699, Zma_g5910, Zma_g5913 ... Zma_g5920, Zma_g6140