Basic Information
Locus ID:
CH03.1443
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
U-box domain-containing protein 33
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 18786334 | 18793293 | + | CH03.1443 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.82 | 91,377.67 Da | 44.98 | 84.97 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 69 | 173 | 1.22838E-25 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 748 | 788 | 3.064E-22 | - |
| Pfam | PF04564 | U-box domain | 744 | 815 | 1.6E-17 | IPR003613 |
| Pfam | PF00069 | Protein kinase domain | 466 | 719 | 5.9E-41 | IPR000719 |
| SUPERFAMILY | SSF103657 | BAR/IMD domain-like | 302 | 436 | 8.16E-6 | IPR027267 |
| SUPERFAMILY | SSF57850 | RING/U-box | 738 | 814 | 4.86E-22 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 443 | 720 | 2.02E-67 | IPR011009 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 743 | 816 | 8.0E-26 | IPR013083 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 449 | 536 | 3.8E-27 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 537 | 729 | 4.4E-47 | - |
| SMART | SM00220 | serkin_6 | 464 | 735 | 1.2E-27 | IPR000719 |
| SMART | SM00504 | Ubox_2 | 747 | 810 | 5.7E-24 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 464 | 731 | 32.513161 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 743 | 816 | 25.256239 | IPR003613 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 582 | 594 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 261 | 306 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 218 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 260 | 306 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 187 | 205 | - | - |
| Coils | Coil | Coil | 71 | 91 | - | - |
| Coils | Coil | Coil | 312 | 343 | - | - |
| Coils | Coil | Coil | 359 | 435 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 3.65E-147 |
| RefSeq | XP_025804490.1 | U-box domain-containing protein 33-like [Panicum hallii] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 3.53E-146 | |
| TrEMBL | A0A2S3GXS0 | RING-type E3 ubiquitin transferase OS=Panicum hallii OX=206008 GN=PAHAL_2G133700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology