Basic Information
Locus ID:
CH03.1438
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Calcium-binding EGF-like domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 18654470 | 18658082 | + | CH03.1438 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 77,883.42 Da | 36.69 | 95.71 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00054 | EGF_CA | 332 | 373 | 1.79105E-4 | - |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 40 | 75 | 1.6E-7 | IPR025287 |
| Pfam | PF00069 | Protein kinase domain | 449 | 709 | 6.6E-44 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 448 | 712 | 8.9E-67 | IPR011009 |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 336 | 382 | 9.8E-9 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 425 | 521 | 5.1E-23 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 522 | 720 | 2.7E-48 | - |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 285 | 335 | 3.6E-6 | - |
| SMART | SM00181 | egf_5 | 285 | 331 | 13.0 | IPR000742 |
| SMART | SM00220 | serkin_6 | 447 | 718 | 2.6E-30 | IPR000719 |
| SMART | SM00179 | egfca_6 | 332 | 380 | 9.5E-7 | IPR001881 |
| SMART | SM00181 | egf_5 | 335 | 380 | 0.18 | IPR000742 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 447 | 714 | 34.930073 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 453 | 475 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 566 | 578 | - | IPR008271 |
| ProSitePatterns | PS01187 | Calcium-binding EGF-like domain signature. | 332 | 364 | - | IPR018097 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21250.1 | cell wall-associated kinase. cell wall-associated kinase, may function as a signaling receptor of extracellular matrix component such as oligogalacturonides. | 3.63E-113 |
| RefSeq | XP_021320294.1 | wall-associated receptor kinase 4 [Sorghum bicolor] | 0 |
| Q39191 | Wall-associated receptor kinase 1 OS=Arabidopsis thaliana OX=3702 GN=WAK1 PE=1 SV=2 | 3.52E-112 | |
| TrEMBL | A0A1B6PGP0 | Protein kinase domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3007G094100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology