Basic Information
Locus ID:
CH03.1375
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RNA recognition motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 18092943 | 18100757 | - | CH03.1375 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 80,258.45 Da | 48.59 | 82.46 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12399 | RRM_HP0827_like | 213 | 276 | 3.01102E-29 | - |
| CDD | cd12399 | RRM_HP0827_like | 113 | 190 | 1.65651E-32 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 214 | 276 | 7.4E-20 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 114 | 183 | 4.0E-18 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 197 | 276 | 2.15E-24 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 108 | 208 | 2.55E-27 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 196 | 288 | 7.5E-24 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 70 | 195 | 2.7E-26 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 213 | 283 | 1.1E-21 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 113 | 186 | 5.6E-25 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 212 | 292 | 16.960629 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 112 | 190 | 18.086285 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 74 | 102 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 102 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24770.1 | 31-kDa RNA binding protein. Encodes a chloroplast RNA-binding protein. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). Required for editing and stability of specific chloroplast mRNAs. | 2.41E-78 |
| RefSeq | XP_002461966.1 | 28 kDa ribonucleoprotein, chloroplastic [Sorghum bicolor] | 4.99E-131 |
| P19683 | 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1 | 8.77E-82 | |
| TrEMBL | A0A0E0M4M2 | RRM domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 3.92E-140 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology