Basic Information
Locus ID:
CH03.1344
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 17791283 | 17793767 | - | CH03.1344 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.14 | 64,071.57 Da | 50.28 | 91.04 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 44 | 78 | 2.6E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 42 | 81 | 2.35E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 37 | 137 | 1.5E-6 | - |
| SMART | SM00256 | fbox_2 | 48 | 88 | 0.0045 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 42 | 89 | 11.246099 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05080.1 | F-box/RNI-like/FBD-like domains-containing protein. | 2.11E-6 |
| RefSeq | XP_034576416.1 | uncharacterized protein LOC117840074 [Setaria viridis] | 5.03E-262 |
| TrEMBL | A0A4U6SRP6 | F-box domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_9G058400v2 PE=4 SV=1 | 1.14E-260 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 10 | AH01.175, BH03.1193, BH03.3926, BH03.3928, BH05.3403 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0211990, gene-QOZ80_3AG0212950 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0517850.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_061269 |
| Poaceae | Oryza coarctata | 2 | Oco06G002870, Oco06G003350 |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G249800, Tel5E01G674400 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC5AG024010, gene_TRIDC5AG055580 ... |
| Poaceae | Triticum aestivum | 13 | TraesCS5A02G142800.1, TraesCS5A02G380200.1 ... |