Basic Information
Locus ID:
CH03.1252
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
PB1 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| CH03 | 16588602 | 16597867 | + | CH03.1252 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.24 | 125,801.75 Da | 55.82 | 67.52 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 928 | 1141 | 1.04173E-90 | - |
| CDD | cd06410 | PB1_UP2 | 167 | 262 | 1.18899E-46 | - |
| Pfam | PF00564 | PB1 domain | 180 | 264 | 3.1E-19 | IPR000270 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 924 | 1135 | 2.5E-50 | IPR001245 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 179 | 265 | 5.89E-22 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 914 | 1136 | 3.42E-66 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 904 | 1140 | 2.4E-68 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 182 | 265 | 9.7E-14 | - |
| SMART | SM00666 | PB1_new | 178 | 265 | 1.0E-32 | IPR000270 |
| SMART | SM00220 | serkin_6 | 922 | 1141 | 8.0E-36 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 922 | 1141 | 39.636696 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 928 | 953 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1047 | 1059 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 723 | 750 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 115 | 131 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 723 | 749 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 477 | 513 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 115 | 155 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 418 | 450 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 138 | 155 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 418 | 433 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 471 | 524 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79570.1 | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain. | 2.44E-212 |
| RefSeq | XP_004956079.1 | serine/threonine-protein kinase pakA [Setaria italica] | 0 |
| Q9SAJ2 | RAF-like serine/threonine-protein kinase 20 OS=Arabidopsis thaliana OX=3702 GN=RAF20 PE=1 SV=1 | 2.36E-211 | |
| TrEMBL | A0A368PYJ9 | Protein kinase domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_2G117800v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology